DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Lpt and pcaf-1

DIOPT Version :9

Sequence 1:NP_611847.2 Gene:Lpt / 37795 FlyBaseID:FBgn0263667 Length:1482 Species:Drosophila melanogaster
Sequence 2:NP_491173.1 Gene:pcaf-1 / 171920 WormBaseID:WBGene00021636 Length:767 Species:Caenorhabditis elegans


Alignment Length:451 Identity:89/451 - (19%)
Similarity:147/451 - (32%) Gaps:142/451 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   669 EMIIQCEHCELWAHFHCDSVN--AQLTIDHYDNNVYKCFKCRCSTRSTNSLADAKFGNEDSLAIT 731
            |.||:|..|.....||.:.:.  :|..:|.|.:.:.....| ||..|.   .|....:..:|.||
 Worm    67 EEIIECRTCGHSISFHAEPLKYLSQEDLDTYTDQISDLQTC-CSELSE---IDPSHESLQTLYIT 127

  Fly   732 PQ-----------GSKPFVHITASSGPSFDSKS-----------------GAERNHPTLSGDMPE 768
            .|           ...||:     ..|:|:.:|                 .||:......|.:  
 Worm   128 MQILLKSLRTLTPVDVPFI-----GKPNFEPESLSPYILVKKFIASRPVDNAEKQRLAEIGTL-- 185

  Fly   769 SAPEALHW-IDGVCLSESGLGMIKSLSTEIKRKRKMRQALGNGKDGQLEAAAEEALE---KYKDG 829
            ...|..|| ::|          .:||:.      |:...|..||...:....:..:.   ||...
 Worm   186 FLTEMNHWKLEG----------FQSLAD------KLNVPLEQGKYRMMYVRMDYYVNMPAKYVSF 234

  Fly   830 MVWDGTENAIPEGFTISINDEGVNILRKKRQRNLQKLGIGGFSVRNRGLKKDSEE--TTAVDQIN 892
            ..:. |.:...|.||.:..:..:|:|......        .|.:....|:::||:  |.|.|...
 Worm   235 KQFQ-TVDIFGEKFTTTFCNYLINVLNTGNYT--------PFGLSESDLEENSEDLITFATDLRR 290

  Fly   893 SLMTMDKKKKIIRKKQKNKLIEAYPVYLQEAFFGKPLLEGGELVMADTDSSDEIDASMKVYFTRP 957
            .|.|.|.:......::|:. |....|.|:.....||           ||.|:  .:|.:...|.|
 Worm   291 YLETEDPQSTSTTNRRKDS-ISTEDVILKYVKRKKP-----------TDHSE--SSSPRELSTSP 341

  Fly   958 --------------EGKSPANQDTLAVNKSPAKTVK----------KVKAELKTENKTV-----F 993
                          ..|||..::::|:.:|..:.:|          |.|.|.:..|..|     .
 Worm   342 VEEPRRRKKEPSSSAKKSPETEESMALLRSLIRAIKFEGDLDAMEPKTKVEFEALNTEVSRGLSA 406

  Fly   994 IQQMPMGIQNKNGTTPVSNVFDPLQ--------AEISN----------------TVFANRH 1030
            :|:...|:..   ...:.|..||.|        .|:.|                .:|.:||
 Worm   407 LQEEESGLIE---FRVIGNDLDPFQHHEQLVHLVELQNLFGAQLPKMPKEYVTRLIFDSRH 464

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LptNP_611847.2 ePHD1_KMT2C_like 109..191 CDD:277135
PHD1_KMT2C_like 205..250 CDD:276984
PHD2_KMT2C_like 252..298 CDD:276985
PHD_SF 337..392 CDD:304600
PHD4_KMT2C_like 530..578 CDD:276987
PHD5_KMT2C_like 580..625 CDD:276988
PHD6_KMT2C_like 657..707 CDD:276989 10/39 (26%)
NHP6B 1101..>1237 CDD:227935
HMG 1173..1231 CDD:197700
pcaf-1NP_491173.1 PCAF_N 9..247 CDD:283997 41/207 (20%)
COG5076 408..735 CDD:227408 11/60 (18%)
Acetyltransf_1 476..544 CDD:278980
Bromo_gcn5_like 650..748 CDD:99941
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5076
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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