DRSC/TRiP Functional Genomics Resources

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Protein Alignment Upf3 and upf3b

DIOPT Version :9

Sequence 1:NP_611844.3 Gene:Upf3 / 37792 FlyBaseID:FBgn0034923 Length:492 Species:Drosophila melanogaster
Sequence 2:NP_957248.1 Gene:upf3b / 393929 ZFINID:ZDB-GENE-040426-1630 Length:467 Species:Danio rerio


Alignment Length:521 Identity:154/521 - (29%)
Similarity:248/521 - (47%) Gaps:105/521 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MAETFAEEKPKEK-------SKASRRKDKKDKTNQIVKIVMRHLPPTMTEAQFLDQVGPLPENDS 58
            |.|.....:|:||       ....:.|..|:|...:.|||:|.||||:|:....:|:.||||.|.
Zfish     1 MKEDKENTRPREKKVEIKCDENDKQEKPCKEKKEAMTKIVIRRLPPTLTKEDLEEQLQPLPELDY 65

  Fly    59 YYYCKADWSLGQEATCRAYIDMSSKDIGEVVQFRDRFDGYVFVDHKGVEYMAIVEYAPFQCFLKN 123
            ..:..:|.||......|||::..::|  ::|.||||||||||:|::|.||.||||:||||...|.
Zfish    66 LEFFSSDTSLFPHLFARAYLNFKNQD--DIVLFRDRFDGYVFIDNRGQEYPAIVEFAPFQKVAKK 128

  Fly   124 KARNDDSKVNTIESEPHYQEFIKRLAQEREEASRMGDVKIDFNFERRTEE--KVKSTPLLQYLAN 186
            :::..|:|..||:.:..|::|::....:.|::....::.:: ..|.:|:|  ..|:||||.:|.|
Zfish   129 RSKKKDAKSGTIDDDADYKKFLEFYNGDEEKSPSNPEILLE-EIEAKTKELSSKKTTPLLDFLKN 192

  Fly   187 K---KEKRREEARRRNEEKRKQREEQKLLRLAAQSDASKLKEAEGGGGGGDTKKPAKKDVKDPQS 248
            |   :|:::||.|||..|:::.|||::  |...:.|..|.||||      ..||..|...||   
Zfish   193 KQRIREEKKEERRRREIERKRLREEER--RKWREEDRRKRKEAE------KLKKVEKASEKD--- 246

  Fly   249 SGSQANDAKASRSKRRTERDQRRREEHEQRKLVKRDKKKDDGQGK--QDKQDKQDK-----GKPS 306
                              :|| .::|..:.||:::.:|.|||:.:  :||..|||:     .:||
Zfish   247 ------------------KDQ-HKDEQPKIKLLRKPEKADDGEAEKPKDKPKKQDRERQKEDRPS 292

  Fly   307 SG--KQNKNSKSMDIVILKKANKPESNESLDVPSTSNAAEASKEKPATENTETPEAAVKVFTPAA 369
            .|  |:.:|.:..:    :|..|||.....:........|..:::......:..|        ..
Zfish   293 GGDLKKRQNGEHRE----EKGGKPEDVGHKEYRDRDGERERDRDRERERRQKEKE--------RI 345

  Fly   370 RGGRKEKRTGADKQPAGSAHETAEEAIKAAQFRASEER--------------------------- 407
            |...:|:|...:.|...:.:...||..|..:.|..|:|                           
Zfish   346 RRQDEERRRRREHQDGENTYRKREEEGKKDKERVWEKRKNEHTGESSGSARPEKSSRDSKKEESA 410

  Fly   408 ---RIRNKDRPSIAIYQPKARIRASDELPQGAGGKDGSDGEASVVEEKTSKRNKRPNRRNKPKPK 469
               |:||||||:|.:|||.:|.|.     :|.||..|:.|:....|    ||.:|..::|:.|..
Zfish   411 RKDRLRNKDRPAIQLYQPGSRNRT-----RGGGGGGGTGGDGPAAE----KRAEREAKKNQEKGA 466

  Fly   470 E 470
            |
Zfish   467 E 467

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Upf3NP_611844.3 Smg4_UPF3 27..186 CDD:281466 62/160 (39%)
upf3bNP_957248.1 Smg4_UPF3 35..194 CDD:281466 63/161 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170579288
Domainoid 1 1.000 125 1.000 Domainoid score I5417
eggNOG 1 0.900 - - E1_KOG1295
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 194 1.000 Inparanoid score I3821
OMA 1 1.010 - - QHG46948
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0002677
OrthoInspector 1 1.000 - - otm24511
orthoMCL 1 0.900 - - OOG6_104140
Panther 1 1.100 - - LDO PTHR13112
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1758
SonicParanoid 1 1.000 - - X2445
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1514.790

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