DRSC/TRiP Functional Genomics Resources

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Protein Alignment Upf3 and Upf3a

DIOPT Version :10

Sequence 1:NP_611844.3 Gene:Upf3 / 37792 FlyBaseID:FBgn0034923 Length:492 Species:Drosophila melanogaster
Sequence 2:NP_001012159.1 Gene:Upf3a / 361176 RGDID:1308778 Length:405 Species:Rattus norvegicus


Alignment Length:434 Identity:129/434 - (29%)
Similarity:211/434 - (48%) Gaps:95/434 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 AET-FAEEKPKEKSKASRR---------KDKKDKTNQIVKIVMRHLPPTMTEAQFLDQVGPLPEN 56
            ||| |..|..:.:|.|...         |.:::|...:.|:|:|.|||.:|:.|..:|:.|||.:
  Rat    28 AETHFRRESTRNESAAPPAPALSESGVGKPREEKRTALSKVVLRRLPPGLTKEQLEEQLRPLPAH 92

  Fly    57 DSYYYCKADWSLGQEATCRAYIDMSSKDIGEVVQFRDRFDGYVFVDHKGVEYMAIVEYAPFQCFL 121
            |.:....||.||......||||:..:.|  :::.||||||||:|:.:||:||.|:||:||||...
  Rat    93 DYFEVVAADLSLYPHLYSRAYINFRNPD--DILLFRDRFDGYIFIGNKGLEYPAVVEFAPFQKIA 155

  Fly   122 KNKARNDDSKVNTIESEPHYQEFIKRLAQEREEASR-----MGDVKIDFNFERRTEEKV--KSTP 179
            |.|.:..|:|..:||.:|.|::|::..:.|.|:.|.     :|::      |.:|.|.:  ::||
  Rat   156 KKKVKKKDAKTGSIEDDPEYKQFLESYSLEEEKTSASPETLLGEI------EAKTRELLARRTTP 214

  Fly   180 LLQYLANKK-------EKRREEARRRNEEKRKQREEQKLLRLAAQSDASKLKEAEGGGGGGDTKK 237
            ||:|:.|:|       |::|||.|||..||::.|||:|  |...:.|..|.|:||       .:|
  Rat   215 LLEYIKNRKLEKQRLREEKREERRRRELEKKRLREEEK--RKRREEDRCKRKDAE-------KQK 270

  Fly   238 PAKKDVK----DPQSSGSQANDAKASRSKRRTERDQRR------REEHEQRKLVKRDKKKDDGQG 292
            .|:|||:    ....:|.:|.          ||:.:.|      .||.::.:||: .:.:..|:.
  Rat   271 RAEKDVRIKLLKKLETGEEAT----------TEKHKERGEAVGAGEEKQEARLVE-SQPETPGER 324

  Fly   293 KQDKQDKQDKGKPSSGKQNKNSKSMDIVILKKANKPESNESLDVPST----SNAAEASKEKPATE 353
            .||..||:.:.|....|:.:.              |..::|....||    :..:..|:|:|...
  Rat   325 LQDGSDKEPRDKRFREKEPET--------------PRCHDSCRKHSTHSEFARFSRRSEEEPKWR 375

  Fly   354 NTETPEAAVKVFTPAARGGRKEKRTGADKQPA-GSAHETAEEAI 396
            ...|.:           ||.:.:..|.   || |.|.:...:.:
  Rat   376 KGFTQD-----------GGERGQDGGV---PADGRAKQQGAQGV 405

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Upf3NP_611844.3 Smg4_UPF3 27..186 CDD:460932 63/165 (38%)
Upf3aNP_001012159.1 RRM_like_Smg4_UPF3A 64..150 CDD:410126 38/87 (44%)

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