Protein Alignment Upf3 and Upf3

DIOPT Version :10

• Sequence 1: NP_611844.3
• Gene: Upf3 / 37792
• FlyBaseID: FBgn0034923
• Length: 492
• Species: Drosophila melanogaster
• Sequence 2: XP_316679.5
• Gene: Upf3 / 1277233
• VectorBaseID: AGAMI1_005703
• Length: 661
• Species: Anopheles gambiae
• Alignment Length: 613
• Identity: 189/613 - (30%)
• Similarity: 274/613 - (44%)
• Gaps: 185/613 - (30%)

  Fly    13 KSKASRR--KDKKDKTNQIVKIVMRHLPPTMTEAQFLDQV---GPLPENDSYYYCKADWSLGQEA 72
            ||..|:|  |:|||....:.::|:|.||||||||.|.:|:   |.||.||.:|:...||:|||.|
Mosquito    50 KSGGSKRNKKNKKDAPAPMTRVVIRRLPPTMTEALFCEQIAVDGKLPANDEFYFVGPDWTLGQNA 114

  Fly    73 TCRAYIDMSSKDIGEVVQFRDRFDGYVFVDHKGVEYMAIVEYAPFQCFLKNKARNDDSKVNTIES 137
            :|||||:.::.  .::.:|.|.:|||.|||.||:||.|:|||||||..||.:||..|.|..||||
Mosquito   115 SCRAYINFTNP--ADIFRFTDSYDGYTFVDSKGMEYQAVVEYAPFQGPLKARARKKDPKCGTIES 177

  Fly   138 EPHYQEFIKRLAQEREEASRMGDVKIDFNFERRTEEKVKSTPLLQYLANKKEKRREEARRRNEEK 202
            :.|:..|.:.|.:|:|||.. |....:|:|:...|||..:||||:|:|.:|:::|:|.||:.|||
Mosquito   178 DTHFIAFKEALEKEQEEALH-GRGTQEFSFKIEQEEKTTTTPLLEYIAQRKQEKRDERRRKQEEK 241

  Fly   203 RKQREEQKLLRL---------AAQSDASKL---------------KEAEGGGGGGDTKKPAKKDV 243
            |:.|:|::.:|.         |.|.:..:.               |.|..|.||||.:   .||.
Mosquito   242 RRMRDEERHMRKTQIARAIPDAIQEEVFQEFMERTALPRLQGAGGKAAAAGKGGGDGR---FKDE 303

  Fly   244 KDPQSSGSQANDAKASRSKRRTERDQRRREEHEQRKLV-----KRDKKKDDGQGKQDK------- 296
            ||           |.|::|:...|:::.....|..|:|     .|||:::...||::|
Mosquito   304 KD-----------KKSKNKKERNREKKGEGPLEGEKVVIMKKQDRDKQQEQRGGKKEKQKQGKEE 357

  Fly   297 -----QDKQDKGKPSSGKQNKNSKSMDIVILKKANKPESNESLDVPSTSNAAEA----------- 345
                 |::|.||....|.: :|.||       |.:|..|....:.|:||.||.:
Mosquito   358 NRFREQNQQQKGGGGGGGE-RNEKS-------KKDKAASGSVSEQPTTSKAASSTTNAAGTIPAS 414

  Fly   346 -----------------------------------------------SKEKPATENTETPE---- 359
                                                           |||..||:.....|
Mosquito   415 GTNTTTTANNNSKKEVKKYSERRKETRARAETRFAEQDSGKSEPAPPSKEAAATDQKAGGEVKKT 479

  Fly   360 ---AAVKVFTPAAR---GGR-------------KEKRTGADKQPAGSAHETAEEA--------IK 397
               |.|..|.|..:   ||:             |..:...:||.|..:.:.:.:|        :.
Mosquito   480 ILTANVPPFVPKEKKPTGGQGSPLADRSADLPDKMAKLSIEKQRAADSGKNSPDAGRSNSAGKLS 544

  Fly   398 AAQFRASEERRIRNKDRPSIAIYQPKARI--------------------RASDEL--PQGAGGKD 440
            ..|..|.|.|:|||||||||.||||:.||                    |.||.:  ...|||..
Mosquito   545 EKQREAREARKIRNKDRPSIEIYQPRKRIVSGGAGGGKSEDDRGRSDSDRPSDNVSASASAGGAA 609

  Fly   441 GSDGEASVVEEK---TSKRNKRPNRRNK 465
            ...|:.:..:.:   |.|.:.||.|..|
Mosquito   610 AESGDGASKDRRHKLTKKASDRPQREKK 637

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Upf3	NP_611844.3	Smg4_UPF3	27..186	CDD:460932	77/161 (48%)
Upf3	XP_316679.5	None