DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment DNAlig1 and LIG6

DIOPT Version :9

Sequence 1:NP_611843.2 Gene:DNAlig1 / 37791 FlyBaseID:FBgn0262619 Length:747 Species:Drosophila melanogaster
Sequence 2:NP_176845.2 Gene:LIG6 / 842991 AraportID:AT1G66730 Length:1396 Species:Arabidopsis thaliana


Alignment Length:796 Identity:267/796 - (33%)
Similarity:439/796 - (55%) Gaps:68/796 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 QKSITSFFKKKSDA----------TDSPSPPKKVPKIDAK---TELPDE--------PHIKSESA 45
            |.::..||.|..|.          |:..:..||:..|||.   .|:.|:        ..::..:|
plant   599 QPTLFKFFNKVLDGGSNSVSVGSETEECNTDKKMVHIDASEAYKEVTDQFIDIVNGSESLRDYAA 663

  Fly    46 S--PETKPKV---------EPMSVDSE---EKTSPVKNVKKEPK-------EVDDKTTDKKVTTI 89
            |  .|.|..:         :|..:..:   |:....|.: :.||       :.|.|.::.....:
plant   664 SIIDEAKGDISRALNIYYSKPREIPGDHAGERGLSSKTI-QYPKCSEACSSQEDKKASENSGHAV 727

  Fly    90 GLNSTAATKEDVE-NY-DPSADSYHPLKNAYWKDKKVTPYLALARTFQVIEETKGRLKMIDTLSN 152
            .:....:.:|.|: || ....:.|.|.::|.|::.:..||:.|.|||..:|..||::|.:..|.|
plant   728 NICVQTSAEESVDKNYVSLPPEKYQPKEHACWREGQPAPYIHLVRTFASVESEKGKIKAMSMLCN 792

  Fly   153 FFCSVMLVSPEDLVPSVYLSINQLAPAYEGLELGVAETTLMKAICKATGRNLAHIKSQTQLTGDL 217
            .|.|:..:||||::|:|||..|::|..:|.:||.:..:.:..|:.:|.|.:.:.::......|||
plant   793 MFRSLFALSPEDVLPAVYLCTNKIAADHENIELNIGGSLISSALEEACGISRSTVRDMYNSLGDL 857

  Fly   218 GIVAEQSRVSQRMMFQPAPLNVRDVFRKLREIAKLSG----QSKMDLVYNMFVACRSSEARFFIR 278
            |.||:..|.:|:::..|.||.|||||..||:|:..:|    :.|.:|:..:..:||..|.:|.:|
plant   858 GDVAQLCRQTQKLLVPPPPLLVRDVFSTLRKISVQTGTGSTRLKKNLIVKLMRSCREKEIKFLVR 922

  Fly   279 SLIGKLRIGIAEQSLLTALAIGLVKKNHIDDCKASKVPDVYKDEIVDTTLLLKTAYCQCPNYDII 343
            :|...||||...:::|.||...:|..:..:|.........:::::...:..:..||...|:.|::
plant   923 TLARNLRIGAMLRTVLPALGRAIVMNSFWNDHNKELSESCFREKLEGVSAAVVEAYNILPSLDVV 987

  Fly   344 IPAILKYDIKELQERCPMHPGMPLRPMLAQPTKGVHEVFERFGGMQITCEWKYDGERAQIHRNEK 408
            :|:::..||:.......|.||:|::||||:..|||.|.|........|||:||||:|||||:...
plant   988 VPSLMDKDIEFSTSTLSMVPGIPIKPMLAKIAKGVQEFFNLSQEKAFTCEYKYDGQRAQIHKLLD 1052

  Fly   409 GEISIFSRNSENNTAKYPDLIARSTALLKGDVKSYIIDSEIVAWD-VERKQILPFQVLSTRKRKN 472
            |.:.|||||.:..|:::|||:...........:::::|:|:||.| :...:::.||.||||:|.:
plant  1053 GTVCIFSRNGDETTSRFPDLVDVIKQFSCPAAETFMLDAEVVATDRINGNKLMSFQELSTRERGS 1117

  Fly   473 VD----IEEIKVQVCVYIFDLLYINGTALVTKNLSERRKLLLEHFQEVE-GEWKFA--------- 523
            .|    .|.|||:|||::||::::||..|:...|.|||:.|.|.|.|.. |..::|         
plant  1118 KDALITTESIKVEVCVFVFDIMFVNGEQLLALPLRERRRRLKEVFPETRPGYLEYAKEITVGAEE 1182

  Fly   524 TALDTND-IDEVQQFLEESIKGNCEGLMVKTLDEEATYEIAKRSRNWLKLKKDYLSNVGDSLDLV 587
            .:|:.:| :..:..||||:.:.:|||:|||:||..|.|...|||.:|||:|:||:..:||:||||
plant  1183 ASLNNHDTLSRINAFLEEAFQSSCEGIMVKSLDVNAGYCPTKRSDSWLKVKRDYVDGLGDTLDLV 1247

  Fly   588 VIGGYKGKGRRTGTYGGFLLACYDTENEEYQSICKIGTGFTDEDLQTHSEFLGKHVTSAAK-SYY 651
            .||.:.|.||:.|.|..||:||::.|.||:||:|::.:||:|.......||..:....|.| .||
plant  1248 PIGAWYGNGRKAGWYSPFLMACFNPETEEFQSVCRVMSGFSDAFYIEMKEFYSEDKILAKKPPYY 1312

  Fly   652 RYDPSLEPDHWFEPVQVWEVKCADLSLSPIHRAAIGIVDGERGISLRFPRFIRIRDDKNSENATD 716
            |...:  ||.||....|||::.||.::||:|.|::|:|...||||:||||||....|:|.|..:.
plant  1313 RTGET--PDMWFSAEVVWEIRGADFTVSPVHSASLGLVHPSRGISVRFPRFISKVTDRNPEECST 1375

  Fly   717 ANQVAHMYQSQDQVKN 732
            |..:|.|:.:|.:..|
plant  1376 ATDIAEMFHAQTRKMN 1391

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DNAlig1NP_611843.2 PLN03113 1..745 CDD:215584 267/796 (34%)
DNA_ligase_A_N 126..292 CDD:282522 62/169 (37%)
Adenylation_DNA_ligase_I_Euk 358..576 CDD:185710 93/233 (40%)
OBF_DNA_ligase_I 581..726 CDD:153438 64/145 (44%)
LIG6NP_176845.2 SNM1A-1C-like_MBL-fold 42..204 CDD:293831
DRMBL 276..380 CDD:284854
PRK01109 766..1389 CDD:234900 234/624 (38%)
DNA_ligase_A_N 766..937 CDD:282522 62/170 (36%)
Adenylation_DNA_ligase_I_Euk 1002..1236 CDD:185710 93/233 (40%)
OBF_DNA_ligase_I 1241..1385 CDD:153438 64/145 (44%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1793
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D274264at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
43.780

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