DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment PHDP and HB-1

DIOPT Version :10

Sequence 1:NP_523834.1 Gene:PHDP / 37788 FlyBaseID:FBgn0025334 Length:220 Species:Drosophila melanogaster
Sequence 2:NP_174164.2 Gene:HB-1 / 839740 AraportID:AT1G28420 Length:1705 Species:Arabidopsis thaliana


Alignment Length:125 Identity:39/125 - (31%)
Similarity:60/125 - (48%) Gaps:36/125 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    87 IGSYNTDFHLKSYGDDGLSLTDKSK---------------QRRIRTTFTSNQLNELEKIFLETHY 136
            :||...|..::|...|. :|.:|.|               :|:::|.|   ||..|||::.|..|
plant     3 MGSDGEDQKIRSVVGDA-NLNNKKKKIDNNSSSKDGRVKPKRQMKTPF---QLETLEKVYSEEKY 63

  Fly   137 PDIYTREEIASKLHLTEARVQVWFQNRRAKFRKQERHAIYIMKDKSSKLDGRKN-PVAGS 195
            |...||.|::.||.|::.::|:||.:||             :|||.   ||:.| ||..|
plant    64 PSEATRAELSEKLDLSDRQLQMWFCHRR-------------LKDKK---DGQSNKPVKSS 107

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PHDPNP_523834.1 Homeodomain 113..169 CDD:459649 22/55 (40%)
HB-1NP_174164.2 Homeodomain 40..96 CDD:459649 24/71 (34%)
DDT 550..605 CDD:460696
HARE-HTH 731..799 CDD:461541
WHIM1 936..975 CDD:464774
WSD 1099..1173 CDD:464775
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.