DRSC/TRiP Functional Genomics Resources

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Protein Alignment PHDP and HDG1

DIOPT Version :10

Sequence 1:NP_523834.1 Gene:PHDP / 37788 FlyBaseID:FBgn0025334 Length:220 Species:Drosophila melanogaster
Sequence 2:NP_191674.1 Gene:HDG1 / 825287 AraportID:AT3G61150 Length:808 Species:Arabidopsis thaliana


Alignment Length:211 Identity:54/211 - (25%)
Similarity:100/211 - (47%) Gaps:35/211 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 FYNSGANGGG-LSVANHINHYNL-----MIDS-----SYKLCANESAI------RGSLNQESSLL 70
            |.:.||.... ||.|.:.||::.     |:.|     |..|..:.|.:      .|.:::...::
plant     6 FLDDGAGASKLLSDAPYNNHFSFSAVDTMLGSAAIAPSQSLPFSSSGLSLGLQTNGEMSRNGEIM 70

  Fly    71 FSKITTVSEFYPATHNIGSYNTDFHLKSYGDDGLSLTD---KSKQRRIRTTFTSNQLNELEKIFL 132
            .|.::..|.   ...::.|.:...:.::...|.|..:|   |.|:|..|  .|..|:.:||.:|.
plant    71 ESNVSRKSS---RGEDVESRSESDNAEAVSGDDLDTSDRPLKKKKRYHR--HTPKQIQDLESVFK 130

  Fly   133 ETHYPDIYTREEIASKLHLTEARVQVWFQNRRAKFRKQ-ERHAIYIMKDKSSKL--------DGR 188
            |..:||...|.:::.:|:|...:|:.||||||.:.:.| |||...:::.::.||        :..
plant   131 ECAHPDEKQRLDLSRRLNLDPRQVKFWFQNRRTQMKTQIERHENALLRQENDKLRAENMSVREAM 195

  Fly   189 KNPVAGSKYLGPSLKG 204
            :||:.|: ..||::.|
plant   196 RNPMCGN-CGGPAVIG 210

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PHDPNP_523834.1 Homeodomain 113..169 CDD:459649 20/55 (36%)
HDG1NP_191674.1 COG5576 69..185 CDD:227863 33/120 (28%)
Homeodomain 111..166 CDD:459649 21/56 (38%)
START_ArGLABRA2_like 314..537 CDD:176884
Blue background indicates that the domain is not in the aligned region.

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