DRSC/TRiP Functional Genomics Resources

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Protein Alignment PHDP and pax8

DIOPT Version :10

Sequence 1:NP_523834.1 Gene:PHDP / 37788 FlyBaseID:FBgn0025334 Length:220 Species:Drosophila melanogaster
Sequence 2:XP_012814730.1 Gene:pax8 / 780226 XenbaseID:XB-GENE-483693 Length:467 Species:Xenopus tropicalis


Alignment Length:187 Identity:38/187 - (20%)
Similarity:67/187 - (35%) Gaps:56/187 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 YNLMIDSSYKLCANESAIRGSLNQESSLLFSKITTVSEFYPATHNIGS-YNTD--FHLKSYGDDG 103
            :||.::|..|          ||:...:|:.|...|..| .|.:.::|| |:..  ..:...|.||
 Frog   158 FNLPMESCVK----------SLSPGQTLIPSSAVTPPE-SPHSDSLGSTYSISGLLGITQPGADG 211

  Fly   104 LSLTDKSKQRRIRTTFTS------------------NQLNELEKIFLETHYPDIYTREEIASKLH 150
            ....|.|.|...|.:..|                  :.|:.||..|...|:|:.|     :|..|
 Frog   212 KRKLDDSDQESCRLSIDSQGSMGISRKQLRTEAYGHHPLDALECHFQRQHFPESY-----SSSTH 271

  Fly   151 LTEARVQVWFQNRRAKFRKQERHAIYIMKDKSSKL-DGRKNPVAGSKYLGPSLKGPQ 206
                              .:...|:|.:...::.: ||:.:..:.:..:|.:|...|
 Frog   272 ------------------SKTEQALYTLPLLNNAMDDGKSSLTSTNTTIGRNLSTHQ 310

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PHDPNP_523834.1 Homeodomain 113..169 CDD:459649 11/73 (15%)
pax8XP_012814730.1 PAX 26..151 CDD:128645
Pax2_C 355..465 CDD:463563
Blue background indicates that the domain is not in the aligned region.

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