DRSC/TRiP Functional Genomics Resources

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Protein Alignment PHDP and Arx

DIOPT Version :9

Sequence 1:NP_523834.1 Gene:PHDP / 37788 FlyBaseID:FBgn0025334 Length:220 Species:Drosophila melanogaster
Sequence 2:NP_001093644.1 Gene:Arx / 317268 RGDID:1562672 Length:566 Species:Rattus norvegicus


Alignment Length:82 Identity:50/82 - (60%)
Similarity:62/82 - (75%) Gaps:9/82 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   100 GDDGLSLTD---------KSKQRRIRTTFTSNQLNELEKIFLETHYPDIYTREEIASKLHLTEAR 155
            |:|.:.|:.         |.||||.||||||.||.|||:.|.:|||||::||||:|.:|.|||||
  Rat   311 GEDSVCLSAGSDSEEGLLKRKQRRYRTTFTSYQLEELERAFQKTHYPDVFTREELAMRLDLTEAR 375

  Fly   156 VQVWFQNRRAKFRKQER 172
            |||||||||||:||:|:
  Rat   376 VQVWFQNRRAKWRKREK 392

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PHDPNP_523834.1 Homeobox 116..168 CDD:278475 39/51 (76%)
ArxNP_001093644.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..21
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 50..79
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 119..264
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 286..319 3/7 (43%)
Homeobox 336..388 CDD:278475 39/51 (76%)
OAR 530..547 CDD:281777
OAR. /evidence=ECO:0000255|PROSITE-ProRule:PRU00138 534..547
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
21.910

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