DRSC/TRiP Functional Genomics Resources

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Protein Alignment PHDP and Dux4

DIOPT Version :10

Sequence 1:NP_523834.1 Gene:PHDP / 37788 FlyBaseID:FBgn0025334 Length:220 Species:Drosophila melanogaster
Sequence 2:NP_001419931.1 Gene:Dux4 / 306226 RGDID:1311053 Length:357 Species:Rattus norvegicus


Alignment Length:125 Identity:41/125 - (32%)
Similarity:61/125 - (48%) Gaps:21/125 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   108 DKSKQR---RIRTTFTSNQLNELEKIFLETHYPDIYTREEIASKLHLTEARVQVWFQNRRAKF-- 167
            ||.:.:   |.||.||..|::.|.:.|.:..:|.|.|||::|.:..:.|:|:.:|||||||:.  
  Rat    87 DKPRVKEAGRSRTHFTKFQIDILIEAFEKNRFPGIVTREKLAQETGIPESRIHIWFQNRRARHPD 151

  Fly   168 RKQERHAIYIMKDKS----SKLDGR----KNPVAGSKYLGPSLKGPQ--NG-----HGRQ 212
            .||...|.....:.|    .|..|:    |:|.:....:.| |..|.  ||     .|||
  Rat   152 PKQGTRATSHPPESSQCPAQKTTGQLAPSKDPTSSCSVILP-LSPPHTPNGPLDLSRGRQ 210

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PHDPNP_523834.1 Homeodomain 113..169 CDD:459649 23/60 (38%)
Dux4NP_001419931.1 homeodomain 15..71 CDD:238039
Homeodomain 96..149 CDD:459649 23/52 (44%)
Blue background indicates that the domain is not in the aligned region.

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