DRSC/TRiP Functional Genomics Resources

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Protein Alignment PHDP and Alx1

DIOPT Version :10

Sequence 1:NP_523834.1 Gene:PHDP / 37788 FlyBaseID:FBgn0025334 Length:220 Species:Drosophila melanogaster
Sequence 2:NP_037053.1 Gene:Alx1 / 25401 RGDID:2273 Length:326 Species:Rattus norvegicus


Alignment Length:179 Identity:71/179 - (39%)
Similarity:87/179 - (48%) Gaps:30/179 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 NSEFYNSGANG------GGLSVANHINHYNLMIDSSYKLCANESAIRGSLNQESSLLFSKITTVS 78
            |..||.....|      |.|..|.|  |..|...|.   |.:.|...|....|...|.:::....
  Rat    37 NESFYGKATAGKCVQAFGPLPRAEH--HVRLDRTSP---CQDSSVNYGITKVEGQPLHTELNRAM 96

  Fly    79 EFYPATHNIGSYNTDF----------HLKSYGDDGLSLTDKSKQRRIRTTFTSNQLNELEKIFLE 133
            :        |..|...          .|...||...|....||:||.||||||.||.||||:|.:
  Rat    97 D--------GCNNLRMSPVKGMPEKSELDELGDKCDSNVSSSKKRRHRTTFTSLQLEELEKVFQK 153

  Fly   134 THYPDIYTREEIASKLHLTEARVQVWFQNRRAKFRKQERHAIYIMKDKS 182
            |||||:|.||::|.:..||||||||||||||||:||:||:. .|.:.||
  Rat   154 THYPDVYVREQLALRTELTEARVQVWFQNRRAKWRKRERYG-QIQQAKS 201

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PHDPNP_523834.1 Homeodomain 113..169 CDD:459649 40/55 (73%)
Alx1NP_037053.1 Homeodomain 133..189 CDD:459649 40/55 (73%)
Transactivation domain. /evidence=ECO:0000269|PubMed:12390248 192..326 4/11 (36%)
OAR 302..320 CDD:461067
OAR. /evidence=ECO:0000255|PROSITE-ProRule:PRU00138 306..319
Blue background indicates that the domain is not in the aligned region.

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