DRSC/TRiP Functional Genomics Resources

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Protein Alignment PHDP and prrx1

DIOPT Version :10

Sequence 1:NP_523834.1 Gene:PHDP / 37788 FlyBaseID:FBgn0025334 Length:220 Species:Drosophila melanogaster
Sequence 2:XP_004913839.1 Gene:prrx1 / 100494324 XenbaseID:XB-GENE-484663 Length:248 Species:Xenopus tropicalis


Alignment Length:172 Identity:64/172 - (37%)
Similarity:93/172 - (54%) Gaps:36/172 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    40 NHYNLMIDSSYKLCAN-ESAIRGSL-NQESSLLFSKITTVSEFYPATHNIGSYNTDFHLKSYGDD 102
            ||:  ::|....|.:. ||.|..|| |.::...|| ::.:.:...|...:|:...|    ..|:.
 Frog     6 NHH--VLDRQGPLGSRLESPITASLDNLQAKKNFS-VSHLLDLEEAGEMVGAQAED----GSGEA 63

  Fly   103 GLSLTD------------------------KSKQRRIRTTFTSNQLNELEKIFLETHYPDIYTRE 143
            |.||.:                        |.||||.||||.|:||..||::|..|||||.:.||
 Frog    64 GRSLLESPGLTSGSDTPQQENEQMNAEQKKKRKQRRNRTTFNSSQLQALERVFERTHYPDAFVRE 128

  Fly   144 EIASKLHLTEARVQVWFQNRRAKFRKQERHAIYIMKDKSSKL 185
            ::|.:::||||||||||||||||||:.||   .::.:|::.|
 Frog   129 DLARRVNLTEARVQVWFQNRRAKFRRNER---AMLANKNASL 167

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PHDPNP_523834.1 Homeodomain 113..169 CDD:459649 37/55 (67%)
prrx1XP_004913839.1 Homeodomain 102..154 CDD:459649 34/51 (67%)
OAR 221..238 CDD:461067
Blue background indicates that the domain is not in the aligned region.

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