DRSC/TRiP Functional Genomics Resources

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Protein Alignment PHDP and pax3b

DIOPT Version :10

Sequence 1:NP_523834.1 Gene:PHDP / 37788 FlyBaseID:FBgn0025334 Length:220 Species:Drosophila melanogaster
Sequence 2:NP_001315326.1 Gene:pax3b / 100150137 ZFINID:ZDB-GENE-080917-53 Length:469 Species:Danio rerio


Alignment Length:171 Identity:63/171 - (36%)
Similarity:80/171 - (46%) Gaps:47/171 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    85 HNIGSYNTDFHLKSYGDDGLSLTD------KSKQRRIRTTFTSNQLNELEKIFLETHYPDIYTRE 143
            |:|.....|  ..|..|:|..:..      |.||||.|||||::||.|||:.|..||||||||||
Zfish   191 HSIEGILAD--RSSPSDEGSEVESEPDLPLKRKQRRSRTTFTADQLEELERAFERTHYPDIYTRE 253

  Fly   144 EIASKLHLTEARVQVWFQNRRAKFRKQ-----------------ERHAI-----YIMKD------ 180
            |:|.:..||||||||||.||||::|||                 ..||:     |.:.:      
Zfish   254 ELAQRAKLTEARVQVWFSNRRARWRKQAGANQLMAFNHLIPGGFSHHAMSSLSPYQLSESPYPPA 318

  Fly   181 ---KSSKLDGRKNPVAGSKYLGPSLKGPQNG--------HG 210
               :.|....|..|:..|.:......||:.|        ||
Zfish   319 ALPQDSGTVHRPQPLPHSSHQSSGGAGPEGGASYCLSSRHG 359

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PHDPNP_523834.1 Homeodomain 113..169 CDD:459649 39/55 (71%)
pax3bNP_001315326.1 PAX 34..158 CDD:366005
Homeodomain 223..279 CDD:459649 39/55 (71%)
Pax7 346..385 CDD:403540 4/14 (29%)
Blue background indicates that the domain is not in the aligned region.

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