DRSC/TRiP Functional Genomics Resources

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Protein Alignment PHDP and rax

DIOPT Version :10

Sequence 1:NP_523834.1 Gene:PHDP / 37788 FlyBaseID:FBgn0025334 Length:220 Species:Drosophila melanogaster
Sequence 2:XP_002936715.1 Gene:rax / 100038124 XenbaseID:XB-GENE-492665 Length:326 Species:Xenopus tropicalis


Alignment Length:208 Identity:74/208 - (35%)
Similarity:102/208 - (49%) Gaps:65/208 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    38 HINHYNLMIDSSYKLC--------ANES------AIRGSLNQESSLLFSKITTVS---------- 78
            |::..:||.|.|:.|.        .|.|      ||.| .::|.|:|.|..|.||          
 Frog     2 HLHSPSLMADGSFSLSGHLLRSPGGNPSRLHSIEAILG-FSKEDSVLGSFQTEVSPRNAKEVDKR 65

  Fly    79 -----------EFYPATHNIGSYNTDFHLKSYGD------------DGLS--------LTD---- 108
                       |.:|...::....:|    .|||            .|||        |:|    
 Frog    66 SSRHCLHKMTEEIHPQQEHLEDGQSD----GYGDPYSGKTSSECLSPGLSTSNNSDNKLSDDEQQ 126

  Fly   109 -KSKQRRIRTTFTSNQLNELEKIFLETHYPDIYTREEIASKLHLTEARVQVWFQNRRAKFRKQER 172
             |.|.||.|||||:.||:|||:.|.::||||:|:|||:|.|::|.|.||||||||||||:|:||:
 Frog   127 PKKKHRRNRTTFTTYQLHELERAFEKSHYPDVYSREELAMKVNLPEVRVQVWFQNRRAKWRRQEK 191

  Fly   173 HAIYIMKDKSSKL 185
            ..:..||.:.|.:
 Frog   192 LEVTSMKLQDSPI 204

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PHDPNP_523834.1 Homeodomain 113..169 CDD:459649 37/55 (67%)
raxXP_002936715.1 Homeodomain 132..188 CDD:459649 37/55 (67%)
OAR 299..315 CDD:461067
Blue background indicates that the domain is not in the aligned region.

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