DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4882 and mrps27

DIOPT Version :9

Sequence 1:NP_001286791.1 Gene:CG4882 / 37787 FlyBaseID:FBgn0025336 Length:406 Species:Drosophila melanogaster
Sequence 2:NP_001003778.1 Gene:mrps27 / 445321 ZFINID:ZDB-GENE-040808-39 Length:398 Species:Danio rerio


Alignment Length:328 Identity:60/328 - (18%)
Similarity:117/328 - (35%) Gaps:118/328 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    84 VKQLLDSTNPQETISVLRNPIQYGLFVDQFSGCFLLDFLLHNGHAVESAQLATILVDRNL---CN 145
            ::|.|......:.:..|:|.:|:|:|.|.|:...|:|               :.:.|::.   |:
Zfish   114 IRQCLKYGARDKALYTLKNKVQFGIFPDDFTFNILID---------------SFIKDKDFKGACS 163

  Fly   146 NELLESLALQSFWSFAKEFKPFESSQVQPPAKNVEVEKVRVKFIRNYPDDASENTEEKKLGRAMV 210
              ::|.:.||         :.||....|     :.......|::...|:.:.:  ||..:|.:::
Zfish   164 --VVEEVMLQ---------ESFEQISTQ-----ILSLHALSKYLATQPELSWQ--EEGSIGASLL 210

  Fly   211 RLGSGEGSLKELKQ------NVALLGYVLTGQV-------------------------------- 237
            ..|        |||      :..|:|..|.|:|                                
Zfish   211 LAG--------LKQENSIGFSARLMGLALIGKVEFSRGIHAVFHEMPLIWSSGYLRRAVAVLQAV 267

  Fly   238 ----------PEASSFL---------------ASNSAALHKETLLAAQSIVESLKLEGSEELLKS 277
                      .:|.:|:               ..|.:.:|    |..:..:|.|||.......:.
Zfish   268 SSDFTGVQISEDALNFMEKILQDLSAISDGANTQNDSEMH----LDEEDQLERLKLPQYISSFRE 328

  Fly   278 LQEAVEKSSK--SNAIQSLLENSVKANVQKFEPKLLADYGESYQEWAKKFEAAVQRQLDSQSVEE 340
            |:|.::...|  |.:::||||     .:...|...|:.|.:..|:|..:.:..:||:.:|:...:
Zfish   329 LKERLQTQDKIVSRSLESLLE-----LLPISEESDLSAYRQRMQDWGDEQQKLIQREAESREKSK 388

  Fly   341 RKA 343
            |.|
Zfish   389 RDA 391

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4882NP_001286791.1 MRP-S27 1..350 CDD:287055 60/328 (18%)
mrps27NP_001003778.1 MRP-S27 1..398 CDD:287055 60/328 (18%)
PPR repeat 109..136 CDD:276811 4/21 (19%)
PPR_1 137..167 CDD:289614 8/46 (17%)
PPR repeat 142..172 CDD:276811 8/55 (15%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170580223
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG4570
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D344346at33208
OrthoFinder 1 1.000 - - FOG0007077
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - LDO PTHR21393
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3141
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
87.930

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