DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4882 and mrps27

DIOPT Version :9

Sequence 1:NP_001286791.1 Gene:CG4882 / 37787 FlyBaseID:FBgn0025336 Length:406 Species:Drosophila melanogaster
Sequence 2:XP_002934866.2 Gene:mrps27 / 100488888 XenbaseID:XB-GENE-943403 Length:410 Species:Xenopus tropicalis


Alignment Length:351 Identity:70/351 - (19%)
Similarity:139/351 - (39%) Gaps:104/351 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    84 VKQLLDSTNPQETISVLRNPIQYGLFVDQFSGCFLLDFLLHNGHAVESAQLAT-ILVDRNL--CN 145
            ::|.|....|::.:..|:|.:|||:|.|.|:...|||..:...:..::..:.| |::..:.  .:
 Frog   114 IRQCLKYGAPEKALYTLQNKVQYGIFPDDFTFNLLLDTFIKTENYQDAVSVVTEIMLQESFEKVS 178

  Fly   146 NELLESLALQSFWSFAKEFKPFESSQVQPPAKNVEVEKVRVKFIRNYPDDASENTEEKKLGRAMV 210
            .:||...||.                               :::...||  .:..:|:.:|.:::
 Frog   179 TQLLSLYALH-------------------------------RYLSGKPD--LKWDQERNIGASLL 210

  Fly   211 RLGSGEGSLKELKQ------NVALLGYVLTGQVPEASSFLASNSAALHKETLL--------AAQS 261
            ..|        |||      :..|.||.|.|:|.     :.:...|::.:..|        .|.:
 Frog   211 LAG--------LKQENTVGYSSQLYGYSLLGKVE-----VCNGLRAVYNQMPLIWTPGYYSRALN 262

  Fly   262 IVESLKLEGSEELLKSLQEAVE--KSSKSNAIQSLLENSVKA---------NVQKFEPKLLADYG 315
            ::|  |:....|.:|..:|:::  |.|...||...||...||         :.:|.|..:|.:|.
 Frog   263 VME--KVSALPEDIKICKESIDILKESLDFAIAQHLEKKSKASGEEPMEPEDPEKTEADVLPEYL 325

  Fly   316 ESYQEWAKKFEAAVQRQLDS-QSVEERKATIQKTLSELEAKRQNLWFFENRDDIDIQIYKKKVYY 379
            ..:||.:.|.::..:...|. |::..:  .:|:.|.:.|..             |::.|:|::  
 Frog   326 HRFQELSAKLDSLSKIATDGLQNLTTK--LVQEILPDCEKS-------------DVERYEKQL-- 373

  Fly   380 PKRW---------FGKKKKPKAADTF 396
             :.|         ..|:.:.||.:.|
 Frog   374 -REWQEERVQLTAREKEMREKAKEEF 398

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4882NP_001286791.1 MRP-S27 1..350 CDD:287055 60/294 (20%)
mrps27XP_002934866.2 MRP-S27 1..404 CDD:401865 70/351 (20%)
PPR repeat 102..136 CDD:276811 5/21 (24%)
PPR repeat 142..169 CDD:276811 5/26 (19%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D344346at33208
OrthoFinder 1 1.000 - - FOG0007077
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

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