DRSC/TRiP Functional Genomics Resources

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Protein Alignment TM4SF and Tspan7

DIOPT Version :10

Sequence 1:NP_001261159.1 Gene:TM4SF / 37786 FlyBaseID:FBgn0020372 Length:292 Species:Drosophila melanogaster
Sequence 2:NP_001385666.1 Gene:Tspan7 / 363447 RGDID:1589725 Length:249 Species:Rattus norvegicus


Alignment Length:254 Identity:63/254 - (24%)
Similarity:96/254 - (37%) Gaps:62/254 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 IKCFKYLVYSYVVLLALTGAAQIFLGTSLLWGH---SVYYGIV-QNKLWAPAAILLCLGPVTFIL 67
            |.|.|.|:..|..:..:|||..:.:|   :||.   ..|..:: :|...|| .:|:..|....:.
  Rat    12 ITCLKTLLIIYSFVFWITGAILLAVG---VWGKLTLGTYISLIAENSTNAP-YVLIGTGTTIVVF 72

  Fly    68 CWMGCQATNQRKRCLLGMFAALLVACICVQFIICGWSLAMRENLPTSVEIFIDDSFVEFLDKFSR 132
            ...||.||.:....:|.::|..|             ||.....|...:..|:...  |..|.|.|
  Rat    73 GLFGCFATCRGSPWMLKLYAMFL-------------SLVFLAELVAGISGFVFRH--EIKDTFLR 122

  Fly   133 TKVDNLHLWN----------RMQSQLQCCGVDGPLDYRRLS---------LPWSCCSRPEHAYES 178
            |..|.:..:|          .:|..|.||||.   :|...|         :|.|||..     |:
  Rat   123 TYTDAMQNYNGKDERSRAVDHVQRSLSCCGVQ---NYTNWSSSPYFLEHGIPPSCCMN-----ET 179

  Fly   179 AC---DTH---------YKRGCLAVVSEQIRNRLLITAFGAAIIAIFQSLGIFCAVHLT 225
            .|   |.|         .::||..:|:..:...:.|.|..|..||..|.:|:..|..|:
  Rat   180 DCNPLDLHNLTVAATKVNQKGCYDLVTSFMETNMGIIAGVAFGIAFSQLIGMLLACCLS 238

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TM4SFNP_001261159.1 Tetraspanin 10..224 CDD:459767 60/248 (24%)
Tspan7NP_001385666.1 Tetraspanin 15..239 CDD:459767 61/251 (24%)
TM4SF2_6_like_LEL 110..213 CDD:239414 27/112 (24%)

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