DRSC/TRiP Functional Genomics Resources

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Protein Alignment TBPH and PUB1

DIOPT Version :10

Sequence 1:NP_477400.1 Gene:TBPH / 37781 FlyBaseID:FBgn0025790 Length:531 Species:Drosophila melanogaster
Sequence 2:NP_014382.1 Gene:PUB1 / 855716 SGDID:S000004961 Length:453 Species:Saccharomyces cerevisiae


Alignment Length:379 Identity:86/379 - (22%)
Similarity:138/379 - (36%) Gaps:117/379 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    80 KENKRKSDDNLENSTAKTKRIETRLRCTDLIVLGLPWKTTEESLREYFETYGEVLMAQIKKDTKS 144
            ::|:.::|.::..:.|.|...||..|.  |.|..|....||:.|::||:..|.:...:|..| |:
Yeast    50 EDNQGENDPSVVPANAITGGRETSDRV--LYVGNLDKAITEDILKQYFQVGGPIANIKIMID-KN 111

  Fly   145 GQSKGFGFVRF-GSYDAQMRVLTNRHLIDGRWCE---VKVP---NSKGMGHQVPCKVFVGRCTED 202
            .::..:.||.: .|:||.:.:.|    ::|:..|   ||:.   .|:.........:|||....:
Yeast   112 NKNVNYAFVEYHQSHDANIALQT----LNGKQIENNIVKINWAFQSQQSSSDDTFNLFVGDLNVN 172

  Fly   203 INSDDLREYFSKF-----GEVTDVFIPRPFRAFSFVTFLDPDVAQ----SLCGEDHIIKGVSVHV 258
            ::.:.||..|..|     |.|.........|.:.||:|...|.||    |:.|:|  :.|..:.:
Yeast   173 VDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQD--LNGRPLRI 235

  Fly   259 SNAAPKAEQNRNQQVQSYNYNSANSFGMHSYHPQGNHMNPGRNGHHRGNNQHNAHGGENAIVPNN 323
            :.||.:...|.|      ||...                                          
Yeast   236 NWAAKRDNNNNN------NYQQR------------------------------------------ 252

  Fly   324 HNIGTAGYGMGGNNYGGNSGGGYHNNGGNHSSGGNTNRQDGGSQYNSRQSN--FHGMNQPHNGNV 386
                        .|||.|:.||:.                   ||||..:|  ..|||...|.|:
Yeast   253 ------------RNYGNNNRGGFR-------------------QYNSNNNNNMNMGMNMNMNMNM 286

  Fly   387 GGSNGWMNRGHLDMPNLQALGINSQGSSSSNQGQNMSNQSMLNLNSLPINPALV 440
            ..|.| |....:.|| :.|:.:.|||....:|...:..|         :||..|
Yeast   287 NNSRG-MPPSSMGMP-IGAMPLPSQGQPQQSQTIGLPPQ---------VNPQAV 329

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TBPHNP_477400.1 TDP43_N 3..78 CDD:465833
RRM1_TDP43 108..181 CDD:409760 22/76 (29%)
RRM2_TDP43 192..261 CDD:409761 20/77 (26%)
PUB1NP_014382.1 RRM1_PUB1 77..150 CDD:410026 22/77 (29%)
RRM2_PUB1 161..240 CDD:410031 21/80 (26%)
RRM3_PUB1 341..414 CDD:410033
Blue background indicates that the domain is not in the aligned region.

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