DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment TBPH and AT1G76460

DIOPT Version :10

Sequence 1:NP_477400.1 Gene:TBPH / 37781 FlyBaseID:FBgn0025790 Length:531 Species:Drosophila melanogaster
Sequence 2:NP_565132.2 Gene:AT1G76460 / 843979 AraportID:AT1G76460 Length:285 Species:Arabidopsis thaliana


Alignment Length:253 Identity:60/253 - (23%)
Similarity:98/253 - (38%) Gaps:71/253 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   107 TDLIVLGLPWKTTEESLREYFETYGEVLMAQIKKDTKSGQSKGFGFVRFGSYDAQMRVLTN-RHL 170
            |.:.|.||.|:|..|:||::||.|||:|.|.:..|..:|:|||:|||.|...:|..|...: ..:
plant    24 TKVFVGGLAWETQSETLRQHFEQYGEILEAVVIADKNTGRSKGYGFVTFRDPEAARRACADPTPI 88

  Fly   171 IDGRWCEVKVPNSKGMGHQVPCKVFVGRCTEDINSDDLREYFSKFGEVTDVFIPRPFRAFSFVTF 235
            ||||.....:.:             :||                         |||...::.:  
plant    89 IDGRRANCNLAS-------------LGR-------------------------PRPPLPYAVI-- 113

  Fly   236 LDPDVAQSLCGEDHIIKGVSVHVSNA-APKAEQNRN---QQVQSYNYNS--ANSFGMHSYHPQGN 294
              |::...|       :..|.::.|. .|:.....|   ||...|||..  ...:|:.:|.|:..
plant   114 --PNMPGRL-------RPASPYIGNVQGPRGSLIGNYPYQQPLPYNYQQGVVYPYGVTAYGPEYM 169

  Fly   295 H-MNPGRNGHHRGNNQHNAHGGENAI-------------VPNNHN-IGTAGYGMGGNN 337
            : .:.|....:.|......:|...|:             :||.|. ....||.:.|::
plant   170 YSQSQGLYSPYMGQQYLQVYGVPGAVNSPVYQYGQLSQTIPNGHGYTAVQGYSVPGSH 227

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TBPHNP_477400.1 TDP43_N 3..78 CDD:465833
RRM1_TDP43 108..181 CDD:409760 30/73 (41%)
RRM2_TDP43 192..261 CDD:409761 8/68 (12%)
AT1G76460NP_565132.2 RRM_RBM24_RBM38_like 24..99 CDD:409818 31/74 (42%)
PABP-1234 <37..245 CDD:130689 54/240 (23%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.