Protein Alignment TBPH and CSTF64

DIOPT Version :10

• Sequence 1: NP_477400.1
• Gene: TBPH / 37781
• FlyBaseID: FBgn0025790
• Length: 531
• Species: Drosophila melanogaster
• Sequence 2: NP_177325.2
• Gene: CSTF64 / 843510
• AraportID: AT1G71800
• Length: 461
• Species: Arabidopsis thaliana
• Alignment Length: 470
• Identity: 97/470 - (20%)
• Similarity: 157/470 - (33%)
• Gaps: 148/470 - (31%)

  Fly   105 RCTDLIVLGLPWKTTEESLREYFETYGEVLMAQIKKDTKSGQSKGFGFVRFGSYDAQMRVLTNRH 169
            ||  :.|..:|:..|||.|||.....|.|:..::..|.::|:.||:||..:  .|.:..:...|:
plant     9 RC--VFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEY--KDEETALSARRN 69

  Fly   170 L----IDGRWCEVK-VPNSKGM---------GHQVPCKVFVGRCTEDIN---------------- 204
            |    |:||...|. ..|.||.         |..:|....|....:.|.
plant    70 LQSYEINGRQLRVDFAENDKGTDKTRDQSQGGPGLPSTTTVTESQKQIGGPVDSNMHQPVGLHLA 134

  Fly   205 -----------------------------SDDLREYFSKF--GEVTDV----------------- 221
                                         ||.|..:.:|.  .::|::
plant   135 TTAASVIAGALGGPQVGSQFTQSNLQVPASDPLALHLAKMSRSQLTEIISSIKLMATQNKEHARQ 199

  Fly   222 -FIPRP------FRAFSFVTFLDPDVAQS---LCGEDHI----IKGVSVHVSNAAPKAEQNRNQQ 272
             .:.||      |.|...:..:.|.|.||   :....|:    |:...:...|..|...| |:||
plant   200 LLVSRPQLLKAVFLAQVMLGIVSPQVLQSPNIVQAPSHMTGSSIQDAQLSGQNLLPPLAQ-RSQQ 263

  Fly   273 VQSYNYNSANSFGMHSYHP-QGNHMNP--------GRNGHHRGN-------NQHNAHGGENAIVP 321
            :         |...||.:| |.:...|        .:.|....|       ...||......:||
plant   264 L---------SRAPHSQYPVQQSSKQPFSQIPQLVAQPGPSSVNPPPRSQVKVENAPFQRQQVVP 319

  Fly   322 NNHNIGTAGYGMGGNNYGGNSGGGYHNNGGNHSSGGNTNRQDGGSQYNSRQSNFHGMNQPHNGNV 386
            .:.|||.:......||       ....:...|.:..|:..|.||...:        :|.....|.
plant   320 ASTNIGYSSQNSVPNN-------AIQPSQVPHQALPNSVMQQGGQTVS--------LNFGKRINE 369

  Fly   387 GGSNGWMNRGHLDMPNLQALGINSQGSSSSNQGQNMSNQSMLNLNSLP---INPALVAAALNQ-W 447
            |..:..|||     |: :.:.:..: .::|..|.::||..:.|....|   |:|.:.:..|.| .
plant   370 GPPHQSMNR-----PS-KMMKVEDR-RTTSLPGGHVSNSMLPNQAQAPQTHISPDVQSTLLQQVM 427

  Fly   448 SLVGNQLQNQNQDQQ 462
            :|...||:....:||
plant   428 NLTPEQLRLLTPEQQ 442

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
TBPH	NP_477400.1	TDP43_N	3..78	CDD:465833
		RRM1_TDP43	108..181	CDD:409760	23/77 (30%)
		RRM2_TDP43	192..261	CDD:409761	17/146 (12%)
CSTF64	NP_177325.2	RRM_CSTF2_RNA15_like	9..85	CDD:409832	25/79 (32%)
		SF-CC1	<11..212	CDD:273721	37/202 (18%)
		CSTF_C	419..454	CDD:464130	7/24 (29%)