DRSC/TRiP Functional Genomics Resources

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Protein Alignment TBPH and AT1G60000

DIOPT Version :10

Sequence 1:NP_477400.1 Gene:TBPH / 37781 FlyBaseID:FBgn0025790 Length:531 Species:Drosophila melanogaster
Sequence 2:NP_176208.1 Gene:AT1G60000 / 842294 AraportID:AT1G60000 Length:258 Species:Arabidopsis thaliana


Alignment Length:201 Identity:51/201 - (25%)
Similarity:74/201 - (36%) Gaps:53/201 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 VQVSEEEGDEPI-----------------ELPAEEDGTLLLSTLQAQF--PGSCGLKYRNLDTKA 49
            |::.|||.|:..                 .||...|...|...:| .|  |....:.| |.||..
plant    62 VKLEEEEKDDGASAVLDPPAAVNTKLYFGNLPYNVDSATLAQIIQ-DFANPELVEVLY-NRDTGQ 124

  Fly    50 VRG----VRSN--EGRLFPPSVESGWGEY------AYFCVFPKENKRKSDDNLENSTAKTKRIET 102
            .||    ..||  :..:...:::.  .||      ..|...||.||.......|:.         
plant   125 SRGFAFVTMSNVEDCNIIIDNLDG--TEYLGRALKVNFADKPKPNKEPLYPETEHK--------- 178

  Fly   103 RLRCTDLIVLGLPWKTTEESLREYFETYGEVLMAQIKKDTKSGQSKGFGFVRFGSYDAQMRVLTN 167
                  |.|..|.|..|.|||...|...|:|:.|::..|..:|:|:|:|||   .|.::..:.|.
plant   179 ------LFVGNLSWTVTSESLAGAFRECGDVVGARVVFDGDTGRSRGYGFV---CYSSKAEMETA 234

  Fly   168 RHLIDG 173
            ...:||
plant   235 LESLDG 240

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TBPHNP_477400.1 TDP43_N 3..78 CDD:465833 23/104 (22%)
RRM1_TDP43 108..181 CDD:409760 23/66 (35%)
RRM2_TDP43 192..261 CDD:409761
AT1G60000NP_176208.1 RRM_SF 86..165 CDD:473069 18/82 (22%)
RRM 178..257 CDD:440488 23/81 (28%)
Blue background indicates that the domain is not in the aligned region.

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