Protein Alignment TBPH and RBP1

DIOPT Version :10

• Sequence 1: NP_477400.1
• Gene: TBPH / 37781
• FlyBaseID: FBgn0025790
• Length: 531
• Species: Drosophila melanogaster
• Sequence 2: NP_176143.1
• Gene: RBP1 / 842216
• AraportID: AT1G58470
• Length: 360
• Species: Arabidopsis thaliana
• Alignment Length: 355
• Identity: 86/355 - (24%)
• Similarity: 131/355 - (36%)
• Gaps: 118/355 - (33%)

  Fly   109 LIVLGLPWKTTEESLREYFETYGEVLMAQIKKDTKSGQSKGFGFVRFGSYDAQMRVLTNRHLIDG 173
            |.|.|:..:|:||:|::||..||.||.|.:.|:..:|:.:|||||||.:....::.|.:.|.|.|
plant     8 LFVGGIAKETSEEALKQYFSRYGAVLEAVVAKEKVTGKPRGFGFVRFANDCDVVKALRDTHFILG 72

  Fly   174 RWCEVKVPNSKGMGHQVPC-----------------------------KVFVGRCTEDINSDDLR 209
            :..:|:....|...:|.|.                             |:|||..:.:...::.:
plant    73 KPVDVRKAIRKHELYQQPFSMQFLERKVQQMNGGLREMSSNGVTSRTKKIFVGGLSSNTTEEEFK 137

  Fly   210 EYFSKFGEVTDVFI------PRPFRAFSFVTFLDPDVAQSLCGED-HIIKGVSVHVSNAAPKAEQ 267
            .||.:||..|||.:      .|| |.|.|||:...|..:.:...: |.:....|.|..|.||
plant   138 SYFERFGRTTDVVVMHDGVTNRP-RGFGFVTYDSEDSVEVVMQSNFHELSDKRVEVKRAIPK--- 198

  Fly   268 NRNQQVQSYNYNSAN------SFGMHSYHPQGN------HMNPGRNGHHRGNNQHNAHGGE---- 316
               :.:||.|.|:.|      ||....|.|:.|      ...|...|:|     ||....:
plant   199 ---EGIQSNNGNAVNIPPSYSSFQATPYVPEQNGYGMVLQFPPPVFGYH-----HNVQAVQYPYG 255

  Fly   317 -------------NAIV--------------PNNHNIGTAGYGMGGNNYGGNSGGGY-------- 346
                         |.|:              |..:|:|...| |.|.:..|.:..||
plant   256 YQFTAQVANVSWNNPIMQPTGFYCAPPHPTPPPTNNLGYIQY-MNGFDLSGTNISGYNPLAWPVT 319

  Fly   347 ------------------HNNGGNHSSGGN 358
                              |:......:|||
plant   320 GDAAGALIHQFVDLKLDVHSQAHQRMNGGN 349

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
TBPH	NP_477400.1	TDP43_N	3..78	CDD:465833
		RRM1_TDP43	108..181	CDD:409760	28/71 (39%)
		RRM2_TDP43	192..261	CDD:409761	22/104 (21%)
RBP1	NP_176143.1	PABP-1234	<8..>277	CDD:130689	73/280 (26%)
		RRM2_Hrp1p	121..198	CDD:409767	23/77 (30%)