DRSC/TRiP Functional Genomics Resources

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Protein Alignment TBPH and RBP47A

DIOPT Version :10

Sequence 1:NP_477400.1 Gene:TBPH / 37781 FlyBaseID:FBgn0025790 Length:531 Species:Drosophila melanogaster
Sequence 2:NP_001321909.1 Gene:RBP47A / 841384 AraportID:AT1G49600 Length:450 Species:Arabidopsis thaliana


Alignment Length:199 Identity:50/199 - (25%)
Similarity:81/199 - (40%) Gaps:39/199 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   123 LREYFETYGEVLMAQIKKDTKSGQSKGFGFVRFGSYDAQMRVLTNRHLIDGRWCE-------VKV 180
            |..:...|..|..|::..|:.:|:|||:||||||..:.:.|.:|.   ::|.:|.       :..
plant   230 LETFAGRYPSVKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTE---MNGAFCSSRQMRVGIAT 291

  Fly   181 P------------------------NSKGMGHQVPCKVFVGRCTEDINSDDLREYFSKFGEVTDV 221
            |                        .|...|......:|||....|:..:||.:.||.||||..|
plant   292 PKRAAAYGQQNGSQALTLAGGHGGNGSMSDGESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSV 356

  Fly   222 FIPRPFRAFSFVTFLDPDVAQSLCGEDHIIKGVSVHVSNAAPKAEQNRNQQVQ-SYNYNSANSFG 285
            .|| ..:...||.|.:...|:...|.   :.|..:..:.......::.|:||| ::::.......
plant   357 KIP-VGKGCGFVQFANRQSAEEAIGN---LNGTVIGKNTVRLSWGRSPNKQVQENFSWICVFKHY 417

  Fly   286 MHSY 289
            ||.|
plant   418 MHFY 421

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TBPHNP_477400.1 TDP43_N 3..78 CDD:465833
RRM1_TDP43 108..181 CDD:409760 19/64 (30%)
RRM2_TDP43 192..261 CDD:409761 21/68 (31%)
RBP47ANP_001321909.1 RRM1_SECp43_like 120..200 CDD:409780
RRM2_SECp43_like 212..291 CDD:409781 19/63 (30%)
RRM_SF 326..397 CDD:473069 21/74 (28%)
Blue background indicates that the domain is not in the aligned region.

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