Protein Alignment TBPH and AT1G20880

DIOPT Version :10

• Sequence 1: NP_477400.1
• Gene: TBPH / 37781
• FlyBaseID: FBgn0025790
• Length: 531
• Species: Drosophila melanogaster
• Sequence 2: NP_564127.1
• Gene: AT1G20880 / 838681
• AraportID: AT1G20880
• Length: 274
• Species: Arabidopsis thaliana
• Alignment Length: 290
• Identity: 66/290 - (22%)
• Similarity: 107/290 - (36%)
• Gaps: 68/290 - (23%)

  Fly   107 TDLIVLGLPWKTTEESLREYFETYGEVLMAQIKKDTKSGQSKGFGFVRFGSYDAQMRVLTN-RHL 170
            |.:.|.||.|:|..|:||.:|:.||::|.|.:..|..:|:|||:|||.|...:|..|...: ..:
plant    24 TKVFVGGLAWETQSETLRRHFDQYGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACVDPTPI 88

  Fly   171 IDGRWCEVKVPNSKGMGHQVPCKVFV------GRCTEDINSDDLREYFSKFGEVTDVFIPRPFRA 229
            ||||....   |...:|...|...:.      ||                      |..|.|:
plant    89 IDGRRANC---NLASLGRSRPPMQYAVIPHAPGR----------------------VRPPSPY-- 126

  Fly   230 FSFVTFLDPDVAQSLCGEDHIIKGVSVHVSNAAPKAEQNRNQQVQSYNYNS--ANSFGMHSYHPQ 292
                           .|.....:|  :|..:       :...|..:|||..  ...:|:..|.|.
plant   127 ---------------VGSVQSPRG--LHFGS-------HPYHQPPTYNYQQGVVYPYGVTPYGPD 167

  Fly   293 GNH-MNPGRNGHHRGNNQHNAHGGENAIVPNNHNIGTAGYGMGGNNYGGNSGGGYHNNGGNHSSG 356
            ..: .:.|..|.:.|......:|...|:....:..|...:.:.| .:|..:|.||.:.|.:....
plant   168 YMYSQSQGFYGPYMGQQYLQVYGVPGAVNSPGYQYGQLSHTIPG-AHGYTAGQGYSHPGSHVLQL 231

  Fly   357 GNTNRQDGGSQYNSRQSNFHGMNQPHNGNV 386
            |.|      |..::.||.:...:.|.:..|
plant   232 GAT------SPMSAIQSPYPSPSAPTHQRV 255

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
TBPH	NP_477400.1	TDP43_N	3..78	CDD:465833
		RRM1_TDP43	108..181	CDD:409760	28/73 (38%)
		RRM2_TDP43	192..261	CDD:409761	8/74 (11%)
AT1G20880	NP_564127.1	RRM_RBM24_RBM38_like	24..99	CDD:409818	30/77 (39%)
		PABP-1234	<37..246	CDD:130689	58/266 (22%)