Protein Alignment TBPH and UBP1B

DIOPT Version :10

• Sequence 1: NP_477400.1
• Gene: TBPH / 37781
• FlyBaseID: FBgn0025790
• Length: 531
• Species: Drosophila melanogaster
• Sequence 2: NP_564018.1
• Gene: UBP1B / 838309
• AraportID: AT1G17370
• Length: 419
• Species: Arabidopsis thaliana
• Alignment Length: 278
• Identity: 62/278 - (22%)
• Similarity: 99/278 - (35%)
• Gaps: 72/278 - (25%)

  Fly   108 DLIVLGLPWKTTEESLREYFETYGEVLMAQIKKDTKSGQSKGFGFVRF-GSYDAQMRVLTNRHLI 171
            ::.|..|..:.|:..|...|..|.....|::..|.|:|:|:|||||.| ...|||..:    ..|
plant   140 NIFVGDLSPEVTDAMLFTCFSVYPTCSDARVMWDQKTGRSRGFGFVSFRNQQDAQTAI----DEI 200

  Fly   172 DGRW-------C-----------EVKVPNSKGM---------------GHQVP------CKVFVG 197
            .|:|       |           :.:..:||.:               ..:.|      ..|:||
plant   201 TGKWLGSRQIRCNWATKGATSGEDKQSSDSKSVVELTSGVSEDGKDTTNGEAPENNAQYTTVYVG 265

  Fly   198 RCTEDINSDDLREYFSKFGE--VTDVFIPRPFRAFSFV---TFLDPDVAQSLCGEDHIIKGVSVH 257
            ....:::..||..:|...|.  :.:|.:.|. :.|.||   |.::..:|..:......:.|..:.
plant   266 NLAPEVSQVDLHRHFHSLGAGVIEEVRVQRD-KGFGFVRYSTHVEAALAIQMGNTHSYLSGRQMK 329

  Fly   258 ------------VSNAAPKAEQN-----RNQQVQSYNYNSANS--FGMH--SYHPQGNHMNPGRN 301
                        .||..|.....     ....:.:|....|.|  .||:  .:||||.|......
plant   330 CSWGSKPTPAGTASNPLPPPAPAPIPGFSASDLLAYERQLAMSKMAGMNPMMHHPQGQHAFKQAA 394

  Fly   302 GHHRGNNQHNAHGG-ENA 318
            ....|:||....|| :||
plant   395 MGATGSNQAIYDGGYQNA 412

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
TBPH	NP_477400.1	TDP43_N	3..78	CDD:465833
		RRM1_TDP43	108..181	CDD:409760	24/91 (26%)
		RRM2_TDP43	192..261	CDD:409761	16/85 (19%)
UBP1B	NP_564018.1	RRM1_PUB1	56..126	CDD:410026
		RRM2_PUB1	138..217	CDD:410031	24/80 (30%)
		RRM3_PUB1	260..336	CDD:410033	15/76 (20%)