DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment TBPH and SR30

DIOPT Version :10

Sequence 1:NP_477400.1 Gene:TBPH / 37781 FlyBaseID:FBgn0025790 Length:531 Species:Drosophila melanogaster
Sequence 2:NP_172386.3 Gene:SR30 / 837433 AraportID:AT1G09140 Length:268 Species:Arabidopsis thaliana


Alignment Length:97 Identity:25/97 - (25%)
Similarity:49/97 - (50%) Gaps:8/97 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly   194 VFVGRCTEDINSDDLREYFSKFGEVTDVFI---PRPFRAFSFVTFLDP-DVAQSLCGED-HIIKG 253
            ::||....||...::.:.|.|:|.:.|:.:   ||| ..::||.|.|| |...::.|.| :...|
plant     9 IYVGNLPGDIRKCEVEDLFYKYGPIVDIDLKIPPRP-PGYAFVEFEDPRDADDAIYGRDGYDFDG 72

  Fly   254 --VSVHVSNAAPKAEQNRNQQVQSYNYNSANS 283
              :.|.:::...:...:.::...||:.:.|.|
plant    73 CRLRVEIAHGGRRFSPSVDRYSSSYSASRAPS 104

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TBPHNP_477400.1 TDP43_N 3..78 CDD:465833
RRM1_TDP43 108..181 CDD:409760
RRM2_TDP43 192..261 CDD:409761 21/73 (29%)
SR30NP_172386.3 RRM_SF 8..79 CDD:473069 21/70 (30%)
RRM2_SF2_plant_like 109..184 CDD:410014
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.