DRSC/TRiP Functional Genomics Resources

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Protein Alignment TBPH and GR-RBP3

DIOPT Version :10

Sequence 1:NP_477400.1 Gene:TBPH / 37781 FlyBaseID:FBgn0025790 Length:531 Species:Drosophila melanogaster
Sequence 2:NP_200911.1 Gene:GR-RBP3 / 836224 AraportID:AT5G61030 Length:309 Species:Arabidopsis thaliana


Alignment Length:386 Identity:96/386 - (24%)
Similarity:144/386 - (37%) Gaps:114/386 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   154 RFGSYDAQMRVLTNRHLIDGRWCEVKVPNSKGMGHQVPC----KVFVGRCTEDINSDDLREYFSK 214
            :||:.   ::..||:.|.    .:|.: :|..:...:.|    |:|:|.....::.|.|||.|:|
plant     6 KFGNI---LKQTTNKQLN----AQVSL-SSPSLFQAIRCMSSSKLFIGGMAYSMDEDSLREAFTK 62

  Fly   215 FGEVTD--VFIPRP---FRAFSFVTFLDPDVA----QSLCGEDHIIKGVSVHVSNAAPKAEQNRN 270
            :|||.|  |.:.|.   .|.|.||||...:.|    |:|.|.|...:.|.|:.:|          
plant    63 YGEVVDTRVILDRETGRSRGFGFVTFTSSEAASSAIQALDGRDLHGRVVKVNYAN---------- 117

  Fly   271 QQVQSYNYNSANSFGMHSYHPQGNHMNPGRNGHHRGNNQHNAHGGENAIVPNNHNIGTAGYGMGG 335
                  :..|...||...|        .|..|.:.|:..:....|...        |:.|||.|.
plant   118 ------DRTSGGGFGGGGY--------GGGGGGYGGSGGYGGGAGGYG--------GSGGYGGGA 160

  Fly   336 NNYGGNSGGGYHNNGGNHSSGGNTNRQDGGSQYNSRQSNFHGMNQPHNGNVGGSNGWMNRGHLDM 400
            ..|||||||||   ||| ::||......||          :|.:...:|..||  |:.:.|..  
plant   161 GGYGGNSGGGY---GGN-AAGGYGGSGAGG----------YGGDATGHGGAGG--GYGSSGGF-- 207

  Fly   401 PNLQALGINSQGSSSSNQGQNMSNQSMLNLNSLPINPALVAAALNQWSLVGNQLQNQNQDQQGGN 465
                       |||.:..|:..|..               |.|:..:          |.....|:
plant   208 -----------GSSGNTYGEGSSAS---------------AGAVGDY----------NGSSGYGS 236

  Fly   466 FLSWMAQNGGHNNANNFGGRKGPNNPNNNPAANGIKTDNSEPQNGNTGWSNQSSGSQNAAE 526
            ..::.:.|||....:.|||     :|..|.:..|  .||::...|.........||...:|
plant   237 ANTYGSSNGGFAGDSQFGG-----SPVGNSSQFG--GDNTQFTAGGQFGGEDQFGSMEKSE 290

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TBPHNP_477400.1 TDP43_N 3..78 CDD:465833
RRM1_TDP43 108..181 CDD:409760 6/26 (23%)
RRM2_TDP43 192..261 CDD:409761 29/81 (36%)
GR-RBP3NP_200911.1 RRM 39..120 CDD:440488 29/96 (30%)
Blue background indicates that the domain is not in the aligned region.

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