Protein Alignment TBPH and AT5G55550

DIOPT Version :10

• Sequence 1: NP_477400.1
• Gene: TBPH / 37781
• FlyBaseID: FBgn0025790
• Length: 531
• Species: Drosophila melanogaster
• Sequence 2: NP_001331843.1
• Gene: AT5G55550 / 835649
• AraportID: AT5G55550
• Length: 507
• Species: Arabidopsis thaliana
• Alignment Length: 510
• Identity: 120/510 - (23%)
• Similarity: 194/510 - (38%)
• Gaps: 138/510 - (27%)

  Fly   109 LIVLGLPWKTTEESLREYFETYGEVLMAQIKKDTKSGQSKGFGFVRFGSYDAQMRVLTNRHLIDG 173
            |.:.|:.|.|.||.||:||..||:|:.|.|.:|..:|:::||||:.|.......||:.::|:|||
plant     8 LFIGGISWDTDEERLRDYFSNYGDVVEAVIMRDRATGRARGFGFIVFADPCVSERVIMDKHIIDG 72

  Fly   174 RW-CE------------------------------------------VKVPNSKGM--------- 186
            |. |:                                          ::|...|.:
plant    73 RTVCDFNHFSIFQQNKQSSDLIATSSICVFESSLNLCFSKCKDQIYVLQVEAKKAVPRDDQQVLK 137

  Fly   187 GHQVPC--------------KVFVGRCTEDINSDDLREYFSKFGEVTDVFI------PRPFRAFS 231
            .|..|.              |:|||.....|..::.:.||.:||.:.||.:      .|| |.|.
plant   138 RHASPIHLMSPVHGGGGRTKKIFVGGLPSSITEEEFKNYFDQFGTIADVVVMYDHNTQRP-RGFG 201

  Fly   232 FVTFLDPDVAQSLCGED-HIIKGVSVHVSNAAPK----AEQNRNQQVQSYNY-NSANSFGMHSYH 290
            |:||...|....:..:. |.:.|..|.|..|.||    ....|:......|| ..:|....:||.
plant   202 FITFDSDDAVDRVLHKTFHELNGKLVEVKRAVPKEISPVSNIRSPLASGVNYGGGSNRMPANSYF 266

  Fly   291 PQGNHMNPGRNGHHR----GNNQHNAHG-GENAIVPNNHNIGTAGYGMGGNN----------YGG 340
               |:..||...::.    |.......| |.||:         :.:|:|.|:          .|.
plant   267 ---NNFAPGPGFYNSLGPVGRRFSPVIGSGRNAV---------SAFGLGLNHDLSLNLNPSCDGT 319

  Fly   341 NSGGGYHNNGGN-HSSGGNTNRQDGGSQYNSRQSNFHGMNQPHNG----------NVGGSNGWMN 394
            :|..||:....| :.:|.:.||......:|..:|.::..|:...|          |:..||| .|
plant   320 SSTFGYNRIPSNPYFNGASPNRYTSPIGHNRTESPYNSNNRDLWGNRTDTAGPGWNLNVSNG-NN 383

  Fly   395 RGHLDMPNLQALGINSQGSSSSNQGQNMSNQSMLNLNSLPIN--PALVAAALNQWSLVGNQL-QN 456
            ||:..:|:..|:..::.|.     |:|....|  .|:|.|.|  ...:.......|:..:.. |.
plant   384 RGNWGLPSSSAVSNDNNGF-----GRNYGTSS--GLSSSPFNGFEGSIGELYRGGSVYSDSTWQQ 441

  Fly   457 QNQDQQGGNFLSWMAQNGGHNNANNFGGRKGPNNPNNNPAANGIKTDNSEPQNGN 511
            |....|..:.|..:::..|::          .:|..::|:||..:|.|.....||
plant   442 QQLPSQSSHELDNLSRAYGYD----------IDNVGSDPSANDPETYNGSYNVGN 486

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
TBPH	NP_477400.1	TDP43_N	3..78	CDD:465833
		RRM1_TDP43	108..181	CDD:409760	30/114 (26%)
		RRM2_TDP43	192..261	CDD:409761	23/89 (26%)
AT5G55550	NP_001331843.1	RRM1_hnRNPA_hnRNPD_like	8..75	CDD:409763	29/66 (44%)
		ELAV_HUD_SF	19..>329	CDD:273741	77/322 (24%)
		RRM2_Hrp1p	158..235	CDD:409767	24/77 (31%)