Protein Alignment TBPH and RBP45A

DIOPT Version :10

• Sequence 1: NP_477400.1
• Gene: TBPH / 37781
• FlyBaseID: FBgn0025790
• Length: 531
• Species: Drosophila melanogaster
• Sequence 2: NP_568815.1
• Gene: RBP45A / 835581
• AraportID: AT5G54900
• Length: 387
• Species: Arabidopsis thaliana
• Alignment Length: 278
• Identity: 68/278 - (24%)
• Similarity: 115/278 - (41%)
• Gaps: 59/278 - (21%)

  Fly    89 NLENSTAKTKRIETRLRCTDLIVLGLPWKTTEESLREYFE-TYGEVLMAQIKKDTKSGQSKGFGF 152
            |...:.|..||.:|......:.|..|..:.|:..|.:.|: .||.|..|::..|..:|:|||:||
plant   136 NWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGF 200

  Fly   153 VRFGSYDAQMRVLTNRHLIDGRWCEVK------------VP-------NSKG--MGHQVP--CKV 194
            |||...:.|||.:|.   ::|::|..:            :|       |::|  .|...|  ..:
plant   201 VRFADENEQMRAMTE---MNGQYCSTRPMRIGPAANKNALPMQPAMYQNTQGANAGDNDPNNTTI 262

  Fly   195 FVGRCTEDINSDDLREYFSKFGEVTDVFIPRPFRAFSFVTFLDPDVAQSLCGEDHIIKGVSVHVS 259
            |||....::..|:|:..|.:|||:..|.|| |.:...||.:.:...|:....   ::.|..:...
plant   263 FVGGLDANVTDDELKSIFGQFGELLHVKIP-PGKRCGFVQYANKASAEHALS---VLNGTQLGGQ 323

  Fly   260 NAAPKAEQNRNQQVQSYNYNSANSFGMHSYHPQGNH----MNPGRNGHHRGNNQHNAHGGENAIV 320
            :......::.|:|.....:|....:| :...|||.:    ..|.::
plant   324 SIRLSWGRSPNKQSDQAQWNGGGYYG-YPPQPQGGYGYAAQPPTQD------------------- 368

  Fly   321 PNNHNIGTAGYGMGGNNY 338
            ||.:..|..|||    ||
plant   369 PNAYYGGYTGYG----NY 382

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
TBPH	NP_477400.1	TDP43_N	3..78	CDD:465833
		RRM1_TDP43	108..181	CDD:409760	25/85 (29%)
		RRM2_TDP43	192..261	CDD:409761	17/68 (25%)
RBP45A	NP_568815.1	RRM1_SECp43_like	61..138	CDD:409780	1/1 (100%)
		RRM2_SECp43_like	153..232	CDD:409781	25/81 (31%)
		RRM3_NGR1_NAM8_like	259..330	CDD:409782	17/74 (23%)