DRSC/TRiP Functional Genomics Resources

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Protein Alignment TBPH and AT5G40490

DIOPT Version :10

Sequence 1:NP_477400.1 Gene:TBPH / 37781 FlyBaseID:FBgn0025790 Length:531 Species:Drosophila melanogaster
Sequence 2:NP_198865.1 Gene:AT5G40490 / 834047 AraportID:AT5G40490 Length:423 Species:Arabidopsis thaliana


Alignment Length:477 Identity:108/477 - (22%)
Similarity:165/477 - (34%) Gaps:139/477 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    79 PKENKRKSDDNLE-------NSTAKTKRIETRLRCTDLIVLGLPWKTTEESLREYFETYGEVLMA 136
            |.|:....||..:       :|..|            :.|.||..:||.....::|..|||:..:
plant    19 PSEDIEDDDDKSQPHSGGGVDSAGK------------IFVGGLARETTSAEFLKHFGKYGEITDS 71

  Fly   137 QIKKDTKSGQSKGFGFVRFGSYDAQMRVLTNRHLIDGRWCEVK--VPNSKGMGHQVPC-KVFVGR 198
            .|.||.|:||.:|||||.:.......:|:.:.|:|.|:..|:|  :|......:.... |:|||.
plant    72 VIMKDRKTGQPRGFGFVTYADSSVVDKVIQDNHIIIGKQVEIKRTIPRGSMSSNDFKTKKIFVGG 136

  Fly   199 CTEDINSDDLREYFSKFGEVTDVFIPRPF-----RAFSFVTFLDPDVAQSLCGEDHIIK--GVSV 256
            ....::.|:.:|:|.:|||:.:..|.|..     |.|.|||:...|:...|..:.:.|:  |..|
plant   137 IPSSVDDDEFKEFFMQFGELKEHQIMRDHSTGRSRGFGFVTYESEDMVDHLLAKGNRIELSGTQV 201

  Fly   257 HVSNAAPKAEQNRNQQVQSYNYNSANSFGMHSYHPQGNHMNPGRNGHHRGNNQHNAHGGENAIVP 321
            .:..|.||...:.....:.:. :|.::||       |.: ..|..|.|.|     .:||......
plant   202 EIKKAEPKKPNSVTTPSKRFG-DSRSNFG-------GGY-GDGYGGGHGG-----GYGGPGGPYK 252

  Fly   322 NNHNIG---TAGYGMGGNNYGGNSGGGY-------------------------HNNGGNHSSGGN 358
            :....|   :.|||..|..:||..||||                         :|.|| :|.||.
plant   253 SGGGYGGGRSGGYGGYGGEFGGYGGGGYGGGVGPYRGEPALGYSGRYGGGGGGYNRGG-YSMGGG 316

  Fly   359 TNRQDG-----GSQYNSRQSNFHGMNQPHNGNVG--------------GSNGWMNRGHLDMPNLQ 404
            .....|     |..|......:.|.:..:.|..|              |..|:...|..||..:.
plant   317 GGYGGGPGDMYGGSYGEPGGGYGGPSGSYGGGYGSSGIGGYGGGMGGAGGGGYRGGGGYDMGGVG 381

  Fly   405 ALGINSQGSSSSNQGQNMSNQSMLNLNSLPINPALVAAALNQWSLVGNQLQNQNQDQQGGNFLSW 469
            ..|....|:.....|                                           ||:|...
plant   382 GGGAGGYGAGGGGNG-------------------------------------------GGSFYGG 403

  Fly   470 MAQNGGHNNANNFGGRKGPNNP 491
            ....||:.     ||..|..:|
plant   404 GGGRGGYG-----GGGSGRYHP 420

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TBPHNP_477400.1 TDP43_N 3..78 CDD:465833
RRM1_TDP43 108..181 CDD:409760 26/74 (35%)
RRM2_TDP43 192..261 CDD:409761 22/76 (29%)
AT5G40490NP_198865.1 RRM_SF 44..114 CDD:473069 25/69 (36%)
RRM_SF 131..209 CDD:473069 23/77 (30%)
Blue background indicates that the domain is not in the aligned region.

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