DRSC/TRiP Functional Genomics Resources

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Protein Alignment TBPH and GR-RBP2

DIOPT Version :10

Sequence 1:NP_477400.1 Gene:TBPH / 37781 FlyBaseID:FBgn0025790 Length:531 Species:Drosophila melanogaster
Sequence 2:NP_193121.1 Gene:GR-RBP2 / 827019 AraportID:AT4G13850 Length:158 Species:Arabidopsis thaliana


Alignment Length:266 Identity:54/266 - (20%)
Similarity:79/266 - (29%) Gaps:138/266 - (51%)


- Green bases have known domain annotations that are detailed below.


  Fly   103 RLRCTDLIVLGLPWKTTEESLREYFETYGEVLMAQIKKDTKSGQSKGFGFVRFGSYDAQMRVLTN 167
            ||..|.|.:.||.|.|.:.|||:.|..:|:|:.|::..|.::|:|:|||||.|....|....::.
plant    31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISE 95

  Fly   168 RHLIDGRWCEVKVPNSKGMGHQVPCKVFVGRCTEDINSDDLREYFSKFGEVTDVFIPRPFRAFSF 232
               :||:                           ::|...:|                       
plant    96 ---MDGK---------------------------ELNGRHIR----------------------- 107

  Fly   233 VTFLDPDVAQSLCGEDHIIKGVSVHVSNAAPKAEQNRNQQVQSYNYNSANSFGMHSYHPQGNHMN 297
                                   |:.:|..|.|.:                              
plant   108 -----------------------VNPANDRPSAPR------------------------------ 119

  Fly   298 PGRNGHHRGNNQHNAHGGENAIVPNNHNIGTAGYGMGGNNYGGNSGGGYHNNGGNHSSGGNTNRQ 362
                          |:|            |..||..||..||| .||||...||.:..||     
plant   120 --------------AYG------------GGGGYSGGGGGYGG-GGGGYGGGGGGYGGGG----- 152

  Fly   363 DGGSQY 368
            |||..:
plant   153 DGGGGF 158

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TBPHNP_477400.1 TDP43_N 3..78 CDD:465833
RRM1_TDP43 108..181 CDD:409760 24/72 (33%)
RRM2_TDP43 192..261 CDD:409761 3/68 (4%)
GR-RBP2NP_193121.1 PLN03134 1..143 CDD:178680 47/244 (19%)
Blue background indicates that the domain is not in the aligned region.

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