DRSC/TRiP Functional Genomics Resources

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Protein Alignment TBPH and CP29

DIOPT Version :10

Sequence 1:NP_477400.1 Gene:TBPH / 37781 FlyBaseID:FBgn0025790 Length:531 Species:Drosophila melanogaster
Sequence 2:NP_001190079.1 Gene:CP29 / 824514 AraportID:AT3G53460 Length:363 Species:Arabidopsis thaliana


Alignment Length:378 Identity:77/378 - (20%)
Similarity:114/378 - (30%) Gaps:159/378 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly   109 LIVLGLPWKTTEESLREYFETYGEVLMAQIKKDTKSGQSKGFGFVRFGSYDAQMRVLTNRHLIDG 173
            |.|..|.:......|.:.||:.|.|.|.::..|..:|:|:|||||...:.               
plant   101 LFVGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTA--------------- 150

  Fly   174 RWCEVKVPNSKGMGHQVPCKVFVGRCTEDINSDDLREYFSKFGEVTDVFIPRPFRAFSFVTFLDP 238
              .||:....:..|                       |.|:            :.......:|  
plant   151 --AEVEAAAQQFNG-----------------------YVSR------------YLCSLLCLYL-- 176

  Fly   239 DVAQSLCGEDHIIKGVSVHVSNAAPKAEQNRNQQVQSYNYNSANSFGMHSYHPQGNHMNPGRNGH 303
             :.:.|||.:...:.:.|:.....||.|::.::..:|..|                       |.
plant   177 -LIRVLCGLEFEGRPLRVNAGPPPPKREESFSRGPRSGGY-----------------------GS 217

  Fly   304 HRGNNQHNAHGGENAIVPNNHNIGTAGYGM-GGNNYGGNSGGGYHNNGGNHSSGGNTNRQDGGSQ 367
            .||....:..||              |||. .|..||...||||    |:..|||..    ||||
plant   218 ERGGGYGSERGG--------------GYGSERGGGYGSERGGGY----GSQRSGGGY----GGSQ 260

  Fly   368 YNSRQSNFHGMNQPHNGNVGGSNGWMNRGHLD-------MPNLQALGINSQGS------------ 413
            .:|..|.      ..:|:..||...:..|:|.       :.||    .|.||.            
plant   261 RSSYGSG------SGSGSGSGSGNRLYVGNLSWGVDDMALENL----FNEQGKVVEARVIYDRDS 315

  Fly   414 -----------SSSNQGQNMSNQSMLNLNSLPINPALVAAALNQWSLVGNQLQ 455
                       |||.:.|...|                  :||...|.|.|::
plant   316 GRSKGFGFVTLSSSQEVQKAIN------------------SLNGADLDGRQIR 350

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TBPHNP_477400.1 TDP43_N 3..78 CDD:465833
RRM1_TDP43 108..181 CDD:409760 19/71 (27%)
RRM2_TDP43 192..261 CDD:409761 7/68 (10%)
CP29NP_001190079.1 U2AF_lg <45..>144 CDD:273727 14/42 (33%)
RRM_SF 100..199 CDD:473069 27/152 (18%)
RRM 278..361 CDD:440488 17/95 (18%)
Blue background indicates that the domain is not in the aligned region.

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