Protein Alignment TBPH and CP33

DIOPT Version :10

• Sequence 1: NP_477400.1
• Gene: TBPH / 37781
• FlyBaseID: FBgn0025790
• Length: 531
• Species: Drosophila melanogaster
• Sequence 2: NP_190806.1
• Gene: CP33 / 824403
• AraportID: AT3G52380
• Length: 329
• Species: Arabidopsis thaliana
• Alignment Length: 239
• Identity: 56/239 - (23%)
• Similarity: 90/239 - (37%)
• Gaps: 51/239 - (21%)

  Fly    62 PPSVESGWGEYAYFCVFPKENKRKSDDNLENSTAKTKRIE----------------TRLRCTD-- 108
            |..:.|....:.:||....| ...:||.::.|..:.:.:|                |:....:
plant    54 PLILHSNIRRHRFFCAAETE-ASSADDEIQASVEEEEEVEEEGDEGEEEVEEEKQTTQASGEEGR 117

  Fly   109 LIVLGLPWKTTEESLREYFETYGEVLMAQIKKDTKSGQSKGFGFVRFGSYDAQMRVLT--NRHLI 171
            |.|..||:..|...|.:.|...|.|:..||..|..:.:|:|||||..||.:.....:.  |...|
plant   118 LYVGNLPYTITSSELSQIFGEAGTVVDVQIVYDKVTDRSRGFGFVTMGSIEEAKEAMQMFNSSQI 182

  Fly   172 DGRWCEVKVPN-SKGMGHQV---------------PCKVFVGRCTEDINSDDLREYFSKFGEVTD 220
            .||..:|..|. .:|..::|               |.||:.|....::.|..|::   .||:...
plant   183 GGRTVKVNFPEVPRGGENEVMRTKIRDNNRSYVDSPHKVYAGNLGWNLTSQGLKD---AFGDQPG 244

  Fly   221 VFIPRPF--------RAFSFVTFLDPDVAQSLCGEDHIIKGVSV 256
            |...:..        |.|.|::|...:..||...   .:.||.|
plant   245 VLGAKVIYERNTGRSRGFGFISFESAENVQSALA---TMNGVEV 285

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
TBPH	NP_477400.1	TDP43_N	3..78	CDD:465833	4/15 (27%)
		RRM1_TDP43	108..181	CDD:409760	25/76 (33%)
		RRM2_TDP43	192..261	CDD:409761	17/73 (23%)
CP33	NP_190806.1	RRM_SF	117..196	CDD:473069	26/78 (33%)
		RRM2_NsCP33_like	220..295	CDD:410187	17/72 (24%)