DRSC/TRiP Functional Genomics Resources

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Protein Alignment TBPH and SR34a

DIOPT Version :10

Sequence 1:NP_477400.1 Gene:TBPH / 37781 FlyBaseID:FBgn0025790 Length:531 Species:Drosophila melanogaster
Sequence 2:NP_190512.3 Gene:SR34a / 824105 AraportID:AT3G49430 Length:300 Species:Arabidopsis thaliana


Alignment Length:189 Identity:41/189 - (21%)
Similarity:60/189 - (31%) Gaps:82/189 - (43%)


- Green bases have known domain annotations that are detailed below.


  Fly   194 VFVGRCTEDINSDDLREYFSKFGEVTDVFI---PRPFRAFSFVTFLDPDVAQSLCGEDHIIKGVS 255
            ::||....||...::.:.|.|:|.:.|:.:   ||| ..:.||.|     ..|...||.|     
plant     9 IYVGNLPGDIREHEIEDIFYKYGRIVDIELKVPPRP-PCYCFVEF-----EHSRDAEDAI----- 62

  Fly   256 VHVSNAAPKAEQNRNQQVQSYNYNSANSFGMHSYHPQGNHMNPGRNGHHRGN---NQHNAHGGEN 317
                                                      .||:|::...   ....||||..
plant    63 ------------------------------------------KGRDGYNLDGCRLRVELAHGGRG 85

  Fly   318 AIVPNNHNIGTAGYGMGGNNYGGNSGGGYHNNGGNHSSGGNTNRQDGGSQYN-SRQSNF 375
                .:.:....|||.||:.|||..|||                  |.:::. ||.|.|
plant    86 ----QSSSDRRGGYGGGGSGYGGGGGGG------------------GSARFGVSRHSEF 122

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TBPHNP_477400.1 TDP43_N 3..78 CDD:465833
RRM1_TDP43 108..181 CDD:409760
RRM2_TDP43 192..261 CDD:409761 18/69 (26%)
SR34aNP_190512.3 RRM_SF 9..79 CDD:473069 21/122 (17%)
RRM2_SF2_plant_like 122..197 CDD:410014 1/1 (100%)
Blue background indicates that the domain is not in the aligned region.

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