Protein Alignment TBPH and RBP47B

DIOPT Version :10

• Sequence 1: NP_477400.1
• Gene: TBPH / 37781
• FlyBaseID: FBgn0025790
• Length: 531
• Species: Drosophila melanogaster
• Sequence 2: NP_188544.1
• Gene: RBP47B / 821447
• AraportID: AT3G19130
• Length: 435
• Species: Arabidopsis thaliana
• Alignment Length: 268
• Identity: 78/268 - (29%)
• Similarity: 110/268 - (41%)
• Gaps: 64/268 - (23%)

  Fly    93 STAKTKRIETRLRCTDLIVL--GLPWKTTEESLREYF-ETYGEVLMAQIKKDTKSGQSKGFGFVR 154
            ||.:.:.:|..   .||.|.  .|....|:..|.|.| :.|..|..|::..|:.:|:|||:||||
plant   189 STGEKRAVENG---PDLSVFVGDLSPDVTDVLLHETFSDRYPSVKSAKVVIDSNTGRSKGYGFVR 250

  Fly   155 FGSYDAQMRVLTNRHLIDGRWCE-------VKVP------------------------NSKGMGH 188
            ||..:.:.|.||.   ::|.:|.       :..|                        .|.|.|.
plant   251 FGDENERSRALTE---MNGAYCSNRQMRVGIATPKRAIANQQQHSSQAVILAGGHGSNGSMGYGS 312

  Fly   189 Q-----VPCKVFVGRCTEDINSDDLREYFSKFGEVTDVFIPRPFRAFSFVTFLD----PDVAQSL 244
            |     ....:|||....|:..:|||:.||:||||..|.|| ..:...||.|.|    .|..:||
plant   313 QSDGESTNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKIP-VGKGCGFVQFADRKSAEDAIESL 376

  Fly   245 CGEDHIIKGVSVHVSNAAPKAEQNRNQQVQSYNYNSANSFGMHSYHPQGNHMNPGRNGHHRGNNQ 309
            .|.  :|...:|.:|......:|.|....|.:|...:..   |.|:..|.:.|     ||..||.
plant   377 NGT--VIGKNTVRLSWGRSPNKQWRGDSGQQWNGGYSRG---HGYNNGGGYAN-----HHDSNNY 431

  Fly   310 HNAHGGEN 317
            |    |||
plant   432 H----GEN 435

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
TBPH	NP_477400.1	TDP43_N	3..78	CDD:465833
		RRM1_TDP43	108..181	CDD:409760	27/82 (33%)
		RRM2_TDP43	192..261	CDD:409761	27/72 (38%)
RBP47B	NP_188544.1	RRM1_SECp43_like	109..189	CDD:409780	78/268 (29%)
		RRM2_SECp43_like	201..280	CDD:409781	27/81 (33%)
		RRM_SF	320..391	CDD:473069	27/73 (37%)