DRSC/TRiP Functional Genomics Resources

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Protein Alignment TBPH and NUC-L2

DIOPT Version :10

Sequence 1:NP_477400.1 Gene:TBPH / 37781 FlyBaseID:FBgn0025790 Length:531 Species:Drosophila melanogaster
Sequence 2:NP_188491.1 Gene:NUC-L2 / 821392 AraportID:AT3G18610 Length:636 Species:Arabidopsis thaliana


Alignment Length:361 Identity:90/361 - (24%)
Similarity:139/361 - (38%) Gaps:80/361 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 SEEEGDEPIELPAEEDGTLLLSTLQAQFPGSCGLKYRNLDTKAVRGVRSNEGRLFPPSVESGWGE 71
            |||:.||. |...|:..|                |...:.:|..:...|::    ..|.||...|
plant   300 SEEDSDEE-ESDDEKPPT----------------KKAKVSSKTSKQESSSD----ESSDESDKEE 343

  Fly    72 YAYFCVFPKENKRKSD----DNLENSTA---KTKRIETRLRCTDLIVLGLPWKTTEESLREYFET 129
            .....|.||  |:.||    |..:.|.|   ||...:|:.....|....|.::.....:..:|:.
plant   344 SKDEKVTPK--KKDSDVEMVDAEQKSNAKQPKTPTNQTQGGSKTLFAGNLSYQIARSDIENFFKE 406

  Fly   130 YGEVLMAQIKKDTKSGQSKGFGFVRFGS-YDAQMRVLTNRHLIDGRWCEVKV------------- 180
            .|||:..:: .....|..||:|.:.|.| .:||..:..|..|:.||  :|::             
plant   407 AGEVVDVRL-SSFDDGSFKGYGHIEFASPEEAQKALEMNGKLLLGR--DVRLDLANERGTPRNSN 468

  Fly   181 PNSKGMGHQ---VPCKVFVGRCTEDINSDDLREYFSKFGEVTDVFIPR-----PFRAFSFVTFLD 237
            |..||.|.|   :..:.|.....||....:||.:|||.||||.|.:|.     ..|.|:::....
plant   469 PGRKGEGSQSRTIYVRGFSSSLGEDEIKKELRSHFSKCGEVTRVHVPTDRETGASRGFAYIDLTS 533

  Fly   238 P-DVAQSLCGEDHIIKGVSVHVSNAAPK-AEQNRNQQVQSYNYNSANSFGMHSYHPQGNHMN--- 297
            . |.|..|.|.:  |.|.::||..:.|: :::.|:.       |.|.:.|.    |:|.|.:   
plant   534 GFDEALQLSGSE--IGGGNIHVEESRPRDSDEGRSS-------NRAPARGA----PRGRHSDRAP 585

  Fly   298 -PGRNGHHRGNNQHNAHGGENAIVPNNHNIGTAGYG 332
             .||........:|:..|....      ...|.|.|
plant   586 RGGRFSDRAPRGRHSDRGAPRG------RFSTRGRG 615

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TBPHNP_477400.1 TDP43_N 3..78 CDD:465833 15/70 (21%)
RRM1_TDP43 108..181 CDD:409760 19/86 (22%)
RRM2_TDP43 192..261 CDD:409761 24/74 (32%)
NUC-L2NP_188491.1 RRM1_NUCLs 385..461 CDD:409884 19/78 (24%)
RRM2_NUCLs 480..556 CDD:409885 24/77 (31%)

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