DRSC/TRiP Functional Genomics Resources

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Protein Alignment TBPH and SCL30A

DIOPT Version :10

Sequence 1:NP_477400.1 Gene:TBPH / 37781 FlyBaseID:FBgn0025790 Length:531 Species:Drosophila melanogaster
Sequence 2:NP_187966.1 Gene:SCL30A / 820559 AraportID:AT3G13570 Length:262 Species:Arabidopsis thaliana


Alignment Length:247 Identity:54/247 - (21%)
Similarity:91/247 - (36%) Gaps:57/247 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   190 VPCKVFVGRCTEDINSDDLREYFSKFGEVTDVFIPRPF-----RAFSFVTFLDP-DVAQSLCGED 248
            :|..:.|.....|...:|||..|.:||.|.|:::||.:     |.|.|:.|:|| |.|::....|
plant    35 LPTSLLVRNLRHDCRQEDLRRPFEQFGPVKDIYLPRDYYTGDPRGFGFIQFMDPADAAEAKHQMD 99

  Fly   249 -HIIKGVSVHVSNAAPKAEQNRNQQVQSYNYNSANSFGMHSYHPQGNHMNPGRNGH----HRGNN 308
             :::.|..:.|    ..||:||.:..:.    .....|..|...|....:|.|...    .||..
plant   100 GYLLLGRELTV----VFAEENRKKPTEM----RTRDRGGRSNRFQDRRRSPPRYSRSPPPRRGRR 156

  Fly   309 QHNAHGGENAIVPNNHNIGTAGYGMGGNNYGGNSGGGYHNNGGNHSSGGNTNRQDGGSQYNSRQS 373
            ..:...|.|:.....|                              ...:.:.||  .:|...:|
plant   157 SRSRSRGYNSPPAKRH------------------------------QSRSVSPQD--RRYEKERS 189

  Fly   374 NFHGMNQPHNGN--VGGSNGWMNRGHLDMPNLQALGINSQGSSSSNQGQNMS 423
              :..:.||||:  ..||.|.: :.|...|. :::......|.:..|.::.|
plant   190 --YSRSPPHNGSRVRSGSPGRV-KSHSRSPR-RSVSPRKNRSYTPEQARSQS 237

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TBPHNP_477400.1 TDP43_N 3..78 CDD:465833
RRM1_TDP43 108..181 CDD:409760
RRM2_TDP43 192..261 CDD:409761 23/75 (31%)
SCL30ANP_187966.1 RRM_SF 37..120 CDD:473069 27/86 (31%)
PABP-1234 <39..252 CDD:130689 53/243 (22%)
Blue background indicates that the domain is not in the aligned region.

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