DRSC/TRiP Functional Genomics Resources

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Protein Alignment TBPH and AT3G07810

DIOPT Version :10

Sequence 1:NP_477400.1 Gene:TBPH / 37781 FlyBaseID:FBgn0025790 Length:531 Species:Drosophila melanogaster
Sequence 2:NP_850539.1 Gene:AT3G07810 / 819972 AraportID:AT3G07810 Length:495 Species:Arabidopsis thaliana


Alignment Length:487 Identity:131/487 - (26%)
Similarity:188/487 - (38%) Gaps:148/487 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   109 LIVLGLPWKTTEESLREYFETYGEVLMAQIKKDTKSGQSKGFGFVRFGSYDAQMRVLTNRHLIDG 173
            |.:.|:.|.|.||.|:|||.::|||:.|.|.||..:|:::|||||.|........|:|.:|.|||
plant     8 LFIGGISWDTNEERLKEYFSSFGEVIEAVILKDRTTGRARGFGFVVFADPAVAEIVITEKHNIDG 72

  Fly   174 RWCEVK--VP----------NSKGM-----GHQVPCKVFVGRCTEDINSDDLREYFSKFGEVTDV 221
            |..|.|  ||          ||..:     |.....|:|||.....:...|.:.||.:||..|||
plant    73 RLVEAKKAVPRDDQNMVNRSNSSSIQGSPGGPGRTRKIFVGGLPSSVTESDFKTYFEQFGTTTDV 137

  Fly   222 FI------PRPFRAFSFVTF-LDPDVAQSLCGEDHIIKGVSVHVSNAAPK---AEQNRNQQVQSY 276
            .:      .|| |.|.|:|: .:..|.:.|....|.:.|..|.|..|.||   ...:|:.....|
plant   138 VVMYDHNTQRP-RGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRAVPKELSPGPSRSPLGAGY 201

  Fly   277 NYNSANSFGMHSYHPQGNHMNPGRNGHHRGNNQHNAHGGENAIVPNNHN-IG---------TAGY 331
            :|..             |.:|...||:.:|.|. .|.||....:....: :|         ::||
plant   202 SYGV-------------NRVNNLLNGYAQGFNP-AAVGGYGLRMDGRFSPVGAGRSGFANYSSGY 252

  Fly   332 GM-------------GGNNYGGNSGGGYHNNGGNHSSGGNTNRQDGGSQYNSRQSNFHGMNQPHN 383
            ||             ||.||.||...|   .|.:....|||||......|             ..
plant   253 GMNVNFDQGLPTGFTGGTNYNGNVDYG---RGMSPYYIGNTNRFGPAVGY-------------EG 301

  Fly   384 GNVGGS---------NGWMNRGHLDMPNLQALGINSQGSSSSNQGQNMSNQSMLNLNSLPINPAL 439
            ||.||:         |.|.|.|.|:..|     .|:..:|::..|.:.|..:.|   |.|.    
plant   302 GNGGGNSSFFSSVTRNLWGNNGGLNYNN-----NNTNSNSNTYMGGSSSGNNTL---SGPF---- 354

  Fly   440 VAAALNQWSLVGNQLQNQNQDQQGGNFLSWMAQNGGHNNANN------FGGRKGPNNPNNNPAAN 498
                                   |.:.::|.|..||:|..:|      :||        |..:..
plant   355 -----------------------GNSGVNWGAPGGGNNAVSNENVKFGYGG--------NGESGF 388

  Fly   499 GIKTDNSEPQNGNTGWSNQSSGSQNAAEKSNF 530
            |:         |..|::.::.|:..||..|:|
plant   389 GL---------GTGGYAARNPGANKAAPSSSF 411

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TBPHNP_477400.1 TDP43_N 3..78 CDD:465833
RRM1_TDP43 108..181 CDD:409760 33/73 (45%)
RRM2_TDP43 192..261 CDD:409761 24/75 (32%)
AT3G07810NP_850539.1 RRM_SF 8..78 CDD:473069 32/69 (46%)
RRM2_Hrp1p 109..186 CDD:409767 25/77 (32%)
Blue background indicates that the domain is not in the aligned region.

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