DRSC/TRiP Functional Genomics Resources

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Protein Alignment TBPH and Msi2

DIOPT Version :10

Sequence 1:NP_477400.1 Gene:TBPH / 37781 FlyBaseID:FBgn0025790 Length:531 Species:Drosophila melanogaster
Sequence 2:XP_006534494.1 Gene:Msi2 / 76626 MGIID:1923876 Length:378 Species:Mus musculus


Alignment Length:394 Identity:88/394 - (22%)
Similarity:130/394 - (32%) Gaps:145/394 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   109 LIVLGLPWKTTEESLREYFETYGEVLMAQIKKDTKSGQSKGFGFVRFGSYDAQMRVLTN-RHLID 172
            :.:.||.|:|:.:|||:||..:||:....:.:|..:.:|:|||||.|....:..:||.. .|.:|
Mouse    23 MFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVDKVLGQPHHELD 87

  Fly   173 GRWCEVKV-------PNSK-----------------GMGHQVPC---KVFVGRCTEDINSDDLRE 210
            .:..:.||       |.|:                 ..|.|:..   |:|||..:.:...:|:::
Mouse    88 SKTIDPKVAFPRRAQPKSQEQGGSWKRTWTTVQARAASGDQMVTRTKKIFVGGLSANTVVEDVKQ 152

  Fly   211 YFSKFGEVTDVFI-----PRPFRAFSFVTFLDPDVAQSLCG-EDHIIKGVSVHVSNAAPKAEQNR 269
            ||.:||:|.|..:     ....|.|.||||.:.||.:.:|. ..|.|....|....|.||...  
Mouse   153 YFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMVECKKAQPKEVM-- 215

  Fly   270 NQQVQSYNYNSANSFGMHSYHPQGNHMNPGRNGHHRGNNQHNAHGGENAIVPNNHNIGTAGYGM- 333
                                      ..||..|..||             :|...:....|.|| 
Mouse   216 --------------------------FPPGTRGRARG-------------LPYTMDAFMLGMGML 241

  Fly   334 GGNNYGGNSGGGY-------------------------------------------------HNN 349
            |..|:....|.||                                                 .|.
Mouse   242 GYPNFVATYGRGYPGFAPSYGYQFPALLPYLNASFPAAAYGPVAAAAVAAARGSVLNSYSAQPNF 306

  Fly   350 GGNHSSGGNTNRQDGGSQYNSRQSNFHGMNQPHNGNVGGSNGWMNRGHLDMPNLQALGINSQGSS 414
            |...|..|:...:.||         |.|.|.|  |.|....|         |..|..|:.:..|:
Mouse   307 GAPASPAGSNPARPGG---------FPGANSP--GPVADLYG---------PASQDSGVGNYISA 351

  Fly   415 SSNQ 418
            :|.|
Mouse   352 ASPQ 355

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TBPHNP_477400.1 TDP43_N 3..78 CDD:465833
RRM1_TDP43 108..181 CDD:409760 25/79 (32%)
RRM2_TDP43 192..261 CDD:409761 23/77 (30%)
Msi2XP_006534494.1 RRM_SF 17..104 CDD:473069 25/80 (31%)
PABP-1234 <35..363 CDD:130689 84/382 (22%)
RRM2_MSI 135..208 CDD:240769 23/72 (32%)
Blue background indicates that the domain is not in the aligned region.

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