DRSC - DRSC Integrative Ortholog Prediction Tool

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits

Protein Alignment TBPH and AT5G08695

DIOPT Version :9

Sequence 1:	NP_001163280.1	Gene:	TBPH / 37781	FlyBaseID:	FBgn0025790	Length:	531	Species:	Drosophila melanogaster
Sequence 2:	NP_001119193.1	Gene:	AT5G08695 / 6241377	AraportID:	AT5G08695	Length:	690	Species:	Arabidopsis thaliana

Alignment Length:	240	Identity:	54/240 - (22%)
Similarity:	86/240 - (35%)	Gaps:	77/240 - (32%)

- Green bases have known domain annotations that are detailed below.

  Fly    80 KENKRKSDDNLENSTAKTKRIETRL--RC-TDLIVLGLPWKTTEESLREYFETYGEVLMAQIKKD 141
            |..|.|..|::.:......||:..|  .| ||          :.|.....|...|||...::.||
plant   153 KTRKSKVGDDVSDMEYFKSRIKKNLDSDCETD----------SREDAINVFPIDGEVKADRVDKD 207

  Fly   142 TKSGQSKGFGFVRFGSYDAQMRVLTNRHLIDGRWCEVKVPNSKGM---GHQVPCKVFVGRCTEDI 203
            .                             ||...||:...|..:   |     ::||.......
plant   208 D-----------------------------DGHAMEVEADGSDDVLDAG-----RLFVHGLPYST 238

  Fly   204 NSDDLREYFSKFGEVTDVFI-----PRPFRAFSFVTFLDPDVAQSLCGE-DHI-IKGVSVHVSNA 261
            ..::|.|:|||||::::|.:     .|..|..:||.:|.|:.|:....: |.: .:|.::|:..|
plant   239 TEEELMEHFSKFGDISEVHLVLDKDTRSCRGMAFVLYLIPESAKMAMDKLDKLPFQGRTLHILPA 303

  Fly   262 APKA--------------------EQNRNQQVQSYNYNSANSFGM 286
            .|:|                    |:.|.......|.|:.|||.|
plant   304 KPRAMSAKQVDNSSNLPKSFKKEREEQRKASEACGNTNAWNSFFM 348

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
TBPH	NP_001163280.1	RRM1_TDP43	108..184	CDD:240767	12/75 (16%)
TBPH	NP_001163280.1	RRM2_TDP43	192..261	CDD:240768	20/75 (27%)
AT5G08695	NP_001119193.1	RRM1_MRD1	4..79	CDD:241009
		ELAV_HUD_SF	6..300	CDD:273741	42/190 (22%)
		RRM3_RBM19_RRM2_MRD1	228..301	CDD:240762	20/72 (28%)
		ELAV_HUD_SF	229..618	CDD:273741	31/120 (26%)
		RRM4_RBM19_RRM3_MRD1	421..492	CDD:240763
		RRM_SF	536..615	CDD:302621
		RRM_SF	635..>661	CDD:302621
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR48033
Phylome	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	1.100