DRSC/TRiP Functional Genomics Resources

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Protein Alignment TBPH and Hnrnpa2b1

DIOPT Version :10

Sequence 1:NP_477400.1 Gene:TBPH / 37781 FlyBaseID:FBgn0025790 Length:531 Species:Drosophila melanogaster
Sequence 2:NP_001361674.1 Gene:Hnrnpa2b1 / 53379 MGIID:104819 Length:353 Species:Mus musculus


Alignment Length:352 Identity:118/352 - (33%)
Similarity:157/352 - (44%) Gaps:65/352 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    96 KTKRIETRLRCTDLIVLGLPWKTTEESLREYFETYGEVLMAQIKKDTKSGQSKGFGFVRFGS--- 157
            :.||.:.:.|  .|.:.||.::|||||||.|:|.:|::....:.:|..|.:|:|||||.|.|   
Mouse    12 RKKREKEQFR--KLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAE 74

  Fly   158 YDAQMRVLTNRHLIDGRWCEVK-----VPNSKGMGHQVPCKVFVGRCTEDINSDDLREYFSKFGE 217
            .||.|  ....|.||||..|.|     ..:.|...|....|:|||...||.....||:||.::|:
Mouse    75 VDAAM--AARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFVGGIKEDTEEHHLRDYFEEYGK 137

  Fly   218 VTDVFI-----PRPFRAFSFVTFLDPD-VAQSLCGEDHIIKGVSVHVSNAAPKAEQNRNQQVQSY 276
            :..:.|     ....|.|.||||.|.| |.:.:..:.|.|.|.:..|..|..:.|.   |:|||.
Mouse   138 IDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIVLQKYHTINGHNAEVRKALSRQEM---QEVQSS 199

  Fly   277 NYNSANSFGMHSYHPQGNHMNPGRNGHHRGNNQ-----------HNAHGGENAIVPNNHNI---- 326
            ......:||.......|.:..||...:.||.:.           :|.:||.    |...|.    
Mouse   200 RSGRGGNFGFGDSRGGGGNFGPGPGSNFRGGSDGYGSGRGFGDGYNGYGGG----PGGGNFGGSP 260

  Fly   327 ----GTAGYGMGG---NNYGGNSGGGYHN-NGGNHSSG-----GNTNRQDGGSQYNSRQS-NFHG 377
                |..|||.||   .|.||..||||.| .|||:.||     ||.|:|.  |.|...:| ||.|
Mouse   261 GYGGGRGGYGGGGPGYGNQGGGYGGGYDNYGGGNYGSGSYNDFGNYNQQP--SNYGPMKSGNFGG 323

  Fly   378 ---MNQPHN------GNVGGSNGWMNR 395
               |..|:.      |..|||.|:..|
Mouse   324 SRNMGGPYGGGNYGPGGSGGSGGYGGR 350

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TBPHNP_477400.1 TDP43_N 3..78 CDD:465833
RRM1_TDP43 108..181 CDD:409760 33/80 (41%)
RRM2_TDP43 192..261 CDD:409761 25/74 (34%)
Hnrnpa2b1NP_001361674.1 Nuclear localization signal. /evidence=ECO:0000255 9..15 0/2 (0%)
RRM1_hnRNPA2B1 19..99 CDD:410155 34/83 (41%)
RRM2_hnRNPA2B1 112..191 CDD:409995 26/78 (33%)
Disordered. /evidence=ECO:0000250|UniProtKB:P22626 193..353 53/167 (32%)
HnRNPA1 302..326 CDD:463312 10/25 (40%)
Nuclear targeting sequence. /evidence=ECO:0000250 308..347 13/40 (33%)
Blue background indicates that the domain is not in the aligned region.

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