DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment TBPH and msi1

DIOPT Version :10

Sequence 1:NP_477400.1 Gene:TBPH / 37781 FlyBaseID:FBgn0025790 Length:531 Species:Drosophila melanogaster
Sequence 2:XP_012816886.1 Gene:msi1 / 496961 XenbaseID:XB-GENE-490596 Length:347 Species:Xenopus tropicalis


Alignment Length:248 Identity:67/248 - (27%)
Similarity:106/248 - (42%) Gaps:46/248 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly   109 LIVLGLPWKTTEESLREYFETYGEVLMAQIKKDTKSGQSKGFGFVRFGSYDAQMRVLT-NRHLID 172
            :.:.||.|:||:|.|||||..:|:|....:.:|..:.:|:|||||.|.......:||. :||.:|
 Frog    22 MFIGGLSWQTTQEGLREYFSHFGDVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSRHELD 86

  Fly   173 GRWCEVKVPNSKGMGHQVPC---KVFVGRCTEDINSDDLREYFSKFGEVTDVFI-----PRPFRA 229
            .:..:.||...:....::..   |:|||..:.:...:|:::||.:||:|.|..:     ....|.
 Frog    87 SKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRG 151

  Fly   230 FSFVTFLDPDVAQSLCG-EDHIIKGVSVHVSNAAPKAEQNRNQQVQSYNYNSANSFGMHSYHPQG 293
            |.||||...|:.:.:|. ..|.|....|....|.||                             
 Frog   152 FGFVTFEGEDIVEKVCDIHFHEINNKMVECKKAQPK----------------------------- 187

  Fly   294 NHMNPGRNGHHRGNNQHNAHGGENAIVPNNHNIGTAGY-GMGGNNYGGNSGGG 345
            ..|:|  .|..||.::...:|.:..::    .||..|| |.....|...|..|
 Frog   188 EVMSP--TGSVRGRSRVMPYGMDAFML----GIGMLGYPGFQAATYASRSYTG 234

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TBPHNP_477400.1 TDP43_N 3..78 CDD:465833
RRM1_TDP43 108..181 CDD:409760 27/72 (38%)
RRM2_TDP43 192..261 CDD:409761 22/77 (29%)
msi1XP_012816886.1 RRM1_MSI1 20..96 CDD:241203 28/73 (38%)
PABP-1234 <32..324 CDD:130689 63/238 (26%)
RRM2_MSI 110..183 CDD:240769 22/72 (31%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.