DRSC/TRiP Functional Genomics Resources

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Protein Alignment TBPH and Hrb87F

DIOPT Version :10

Sequence 1:NP_477400.1 Gene:TBPH / 37781 FlyBaseID:FBgn0025790 Length:531 Species:Drosophila melanogaster
Sequence 2:NP_476806.2 Gene:Hrb87F / 48535 FlyBaseID:FBgn0004237 Length:385 Species:Drosophila melanogaster


Alignment Length:389 Identity:118/389 - (30%)
Similarity:169/389 - (43%) Gaps:69/389 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    86 SDDNLENSTAKTKRIETRLRCTDLIVLGLPWKTTEESLREYFETYGEVLMAQIKKDTKSGQSKGF 150
            |:.|.::....|:..:.|    .|.:.||.::||::.|:.:||.:|.::...:.||.|:.:|:||
  Fly     7 SNGNYDDGEEITEPEQLR----KLFIGGLDYRTTDDGLKAHFEKWGNIVDVVVMKDPKTKRSRGF 67

  Fly   151 GFVRFG-SYDAQMRVLTNRHLIDGRWCEVK--VP----NSKGMGHQVPCKVFVGRCTEDINSDDL 208
            ||:.:. ||..........|.||||..|.|  ||    :|...|..|. |:|||...:|.:.:.|
  Fly    68 GFITYSQSYMIDNAQNARPHKIDGRTVEPKRAVPRQEIDSPNAGATVK-KLFVGGLRDDHDEECL 131

  Fly   209 REYFSKFGEVTDVFI-----PRPFRAFSFVTFLDPD-VAQSLCGEDHIIKGVSVHVSNAAPKAEQ 267
            ||||..||::..|.|     ....|.|:|:.|.|.| |.:.:..:.|.||..::.|..|..|.:.
  Fly   132 REYFKDFGQIVSVNIVSDKDTGKKRGFAFIEFDDYDPVDKIILQKTHSIKNKTLDVKKAIAKQDM 196

  Fly   268 NR-------------------------------NQQVQSYNYNSANSFGMHSYHPQGNHMNPGRN 301
            :|                               |:|....|:..|...|  .:...|.:...|:.
  Fly   197 DRQGGGGGRGGPRAGGRGGQGDRGQGGGGWGGQNRQNGGGNWGGAGGGG--GFGNSGGNFGGGQG 259

  Fly   302 GHHRGNNQHNAHGGENAIVP-NNHNIGTAGY-GMGGNNY-GGNSGGGYHNNGGNHSSG---GNTN 360
            |...|.||....||.    | ||...|..|: |.||..| ||||.|.:..|||....|   ||..
  Fly   260 GGSGGWNQQGGSGGG----PWNNQGGGNGGWNGGGGGGYGGGNSNGSWGGNGGGGGGGGGFGNEY 320

  Fly   361 RQD--GGSQYNSRQSNFHGMNQPHNGNVGGSNGWMNRGHLDMPNLQALGINSQGSSSSNQGQNM 422
            :|.  ||.|   |.||| |.|:|...:.||..|..|:|  :....|....|:..:....||.||
  Fly   321 QQSYGGGPQ---RNSNF-GNNRPAPYSQGGGGGGFNKG--NQGGGQGFAGNNYNTGGGGQGGNM 378

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TBPHNP_477400.1 TDP43_N 3..78 CDD:465833
RRM1_TDP43 108..181 CDD:409760 26/75 (35%)
RRM2_TDP43 192..261 CDD:409761 25/74 (34%)
Hrb87FNP_476806.2 RRM1_hnRNPA_like 25..102 CDD:409992 27/76 (36%)
RRM_SF 116..188 CDD:473069 24/71 (34%)
Blue background indicates that the domain is not in the aligned region.

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