DRSC/TRiP Functional Genomics Resources

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Protein Alignment TBPH and rbm34

DIOPT Version :10

Sequence 1:NP_477400.1 Gene:TBPH / 37781 FlyBaseID:FBgn0025790 Length:531 Species:Drosophila melanogaster
Sequence 2:NP_001004890.1 Gene:rbm34 / 448232 XenbaseID:XB-GENE-5895036 Length:412 Species:Xenopus tropicalis


Alignment Length:99 Identity:32/99 - (32%)
Similarity:50/99 - (50%) Gaps:17/99 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    82 NKRKSDDNLENSTAKTKRIETRLRCTDLIVLGLPWKTTEESLREYFETYGEVLMAQIKKDTKSGQ 146
            :||.|.||..::                .:..||::..||::|::|...|:|...:|.:|.|:|.
 Frog   262 SKRSSHDNKRSA----------------FIGNLPYEIEEEAVRDHFSECGKVQGVRIIRDQKTGI 310

  Fly   147 SKGFGFVRFGSYDA-QMRVLTNRHLIDGRWCEVK 179
            .||||:|.|.|.|| |:.:..|...:.||...||
 Frog   311 GKGFGYVLFESADAVQLALKLNNSELSGRKIRVK 344

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TBPHNP_477400.1 TDP43_N 3..78 CDD:465833
RRM1_TDP43 108..181 CDD:409760 27/73 (37%)
RRM2_TDP43 192..261 CDD:409761
rbm34NP_001004890.1 RRM1_RBM34 168..259 CDD:409828
RRM2_RBM34 272..344 CDD:409829 25/87 (29%)
Blue background indicates that the domain is not in the aligned region.

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