DRSC/TRiP Functional Genomics Resources

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Protein Alignment TBPH and CG7903

DIOPT Version :10

Sequence 1:NP_477400.1 Gene:TBPH / 37781 FlyBaseID:FBgn0025790 Length:531 Species:Drosophila melanogaster
Sequence 2:NP_651755.2 Gene:CG7903 / 43554 FlyBaseID:FBgn0039730 Length:384 Species:Drosophila melanogaster


Alignment Length:394 Identity:95/394 - (24%)
Similarity:129/394 - (32%) Gaps:113/394 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   193 KVFVG---RCTEDINSDDLREYFSKFGEVTDVFIPRPFRAFSFVTFLDPDVAQSLCG--EDHIIK 252
            |||||   ||    ..::||..|:.:|.|.:..:   ....:||...:.|:|::...  ...|.|
  Fly     6 KVFVGSLPRC----KPEELRRLFTNYGSVVECDV---MNRCAFVHLENTDMAEAAIAALNGTIFK 63

  Fly   253 GVSVHVSNAAPK------------AEQN---RNQQVQ---------SYNYNSANSF--------- 284
            |..:.|....||            :..|   |..|||         ..|.|...:|         
  Fly    64 GQPIVVEAGRPKYGPGGGSRGQPGSGDNPGRRPSQVQGGGADKRPHESNTNFKRNFREEVGGRFS 128

  Fly   285 --GMHSYHPQGNHMNPGRNGHHRGNNQHNAHGGENAIVPNNHNIGTAGYGM-----GGNNYGGNS 342
              |..|.:.......|.||    .:|.........:..|.|:.....|.|.     ||..:||::
  Fly   129 NEGPRSSNSSAAKFGPVRN----ESNYRQQRSAPYSKGPPNNESSNQGQGFRNKFAGGGKFGGSA 189

  Fly   343 GGGYHNNGGNHSSGGNTNRQDGGSQYNSRQSNFHGMNQPHNGNVGGSNGWMNRGHLDMPNLQALG 407
            |     |.|...|.....|.:.|.|...|  ||  .|.|.:|..||.|                 
  Fly   190 G-----NEGRFGSNRFQQRDNSGPQPGRR--NF--KNSPTSGYRGGGN----------------- 228

  Fly   408 INS--QGSSSSNQGQNMSNQSMLNLNSLPINPALVAAALNQWSLVGNQLQNQNQDQQGGNFLSWM 470
             ||  ||.|||:.|....||   ........|:.|......::|   .:::|.|....|.|    
  Fly   229 -NSDFQGGSSSSGGGGSVNQ---RAGGGGPGPSHVRQDRRGFAL---PVEHQQQQMGFGRF---- 282

  Fly   471 AQNGGHNNANNFGGRKGPNNPNNNPAANG----------IKTDNSEPQ-----NGNTGWSNQSSG 520
             .||..|:.|.  |..|.|.|......||          ...:.|.||     .|.:|..|.:..
  Fly   283 -GNGPMNSGNR--GTNGGNPPGGRGFFNGGGGGFNDRRDSSHETSSPQGGPSKRGGSGGRNHNQN 344

  Fly   521 SQNA 524
            ..||
  Fly   345 GINA 348

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TBPHNP_477400.1 TDP43_N 3..78 CDD:465833
RRM1_TDP43 108..181 CDD:409760
RRM2_TDP43 192..261 CDD:409761 20/72 (28%)
CG7903NP_651755.2 RRM_SF 6..70 CDD:473069 19/70 (27%)
PABP-1234 <18..173 CDD:130689 31/161 (19%)
Blue background indicates that the domain is not in the aligned region.

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