DRSC/TRiP Functional Genomics Resources

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Protein Alignment TBPH and Rbp4

DIOPT Version :10

Sequence 1:NP_477400.1 Gene:TBPH / 37781 FlyBaseID:FBgn0025790 Length:531 Species:Drosophila melanogaster
Sequence 2:NP_476935.1 Gene:Rbp4 / 41668 FlyBaseID:FBgn0010258 Length:428 Species:Drosophila melanogaster


Alignment Length:404 Identity:92/404 - (22%)
Similarity:151/404 - (37%) Gaps:107/404 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   109 LIVLGLPWKTTEESLREYFETYGEVLMAQIKKDTKSGQSKGFGFVRFGSYDAQMRVLTNR---HL 170
            :.:.||..:||.|:||.:|..:|.|..|.:.:|..|..|:|||||.:  .|.:...:..|   |.
  Fly    34 IFIGGLSTQTTVETLRGFFSQFGIVADAVVLRDPVSNHSRGFGFVTY--VDPKSVEIVQRARPHT 96

  Fly   171 IDGRWCEVK--VPNSK-----GMGHQV---PC--------KVFVGRCTEDINSDDLREYFSKFGE 217
            ||.:..|.|  :|...     |:|..|   .|        ::|:|...|..:.:.:|||||:||.
  Fly    97 IDNKIVETKHALPRQDFKRGGGVGSVVGSFGCEAGFMNSKRIFLGGLKEYHDENIVREYFSQFGP 161

  Fly   218 VTDV--FIPRPF---RAFSFVTFLDPDVAQ-SLCGEDHIIKGVSVHVSNAAPKAEQN-------- 268
            |..|  .:.|..   |||.|:.|:||..|: :|....|.|....|.|..:..||::.        
  Fly   162 VASVKLLMDRETGRQRAFGFLEFVDPSSAEKALAPRKHWILQTLVEVKRSTQKADRRFRFPIFSS 226

  Fly   269 --------RNQQVQSYNYNSAN----------------SFGMHSYHPQGNHMNPGRNGHHRGNNQ 309
                    :.....|||||:.|                :...|...|......||:|        
  Fly   227 VRAGYIPPQPATADSYNYNNPNYNPYLAQSVLPPSAFTNGWAHYVIPMAPKPTPGQN-------- 283

  Fly   310 HNAHGGENAIVPN----NHNIGTAGYGMGGNNYGGNSGGGYHNNGGNHSSGGNTNRQDGGSQYNS 370
                  ..|.:|:    .|::         |.:|.:....|...|                .|::
  Fly   284 ------MAASLPSQQLAEHSL---------NGHGPDMWSSYPKTG----------------IYSA 317

  Fly   371 RQSNFHGMNQ--PHNGNVGGSNGWMNRGHLDMPNLQALGINSQGSSSSNQGQNMSNQSMLNLNSL 433
            ::.....:.:  |..|:........:|..:|:..|||...|::....:....:..:.:.|.| .|
  Fly   318 QEWTSSKVAEWGPKAGHKHAQTSTNDRAKIDLKELQAATFNNKLDFGARGDADRMSGAGLGL-GL 381

  Fly   434 PINPALVAAALNQW 447
            ....|:...|:.:|
  Fly   382 TGGAAVGVGAIKKW 395

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TBPHNP_477400.1 TDP43_N 3..78 CDD:465833
RRM1_TDP43 108..181 CDD:409760 26/76 (34%)
RRM2_TDP43 192..261 CDD:409761 27/82 (33%)
Rbp4NP_476935.1 RRM_SF 34..105 CDD:473069 25/72 (35%)
RRM2_hnRNPA_like 137..209 CDD:409766 25/71 (35%)
Blue background indicates that the domain is not in the aligned region.

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