Sequence 1: | NP_001163280.1 | Gene: | TBPH / 37781 | FlyBaseID: | FBgn0025790 | Length: | 531 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | XP_012821726.1 | Gene: | tardbp / 394651 | XenbaseID: | XB-GENE-974453 | Length: | 418 | Species: | Xenopus tropicalis |
Alignment Length: | 539 | Identity: | 211/539 - (39%) |
---|---|---|---|
Similarity: | 279/539 - (51%) | Gaps: | 158/539 - (29%) |
- Green bases have known domain annotations that are detailed below.
Fly 1 MDFVQVSEEEGDEPIELPAEEDGTLLLSTLQAQFPGSCGLKYRNLDTKAVRGVRSNEGRLFPPSV 65
Fly 66 ESGWGEYAYFCVFPKENKRKSDDNLENSTAKTKRIETRLRCTDLIVLGLPWKTTEESLREYFETY 130
Fly 131 GEVLMAQIKKDTKSGQSKGFGFVRFGSYDAQMRVLTNRHLIDGRWCEVKVPNSKGMGHQVPC-KV 194
Fly 195 FVGRCTEDINSDDLREYFSKFGEVTDVFIPRPFRAFSFVTFLDPDVAQSLCGEDHIIKGVSVHVS 259
Fly 260 NAAPKAEQNRNQQVQSYNYNSANSFGMHSYHPQGNHMNPGRNGHHRGNNQHNAHGGENAIVPNNH 324
Fly 325 NIGTAGYGMGGNNYGGNSGGGYHNNGGNHSSGGNTNRQDGGSQYNSRQSNFHGMNQPHNGNVGGS 389
Fly 390 NGWMNRGHLDMPNLQALGINSQGSSSSNQGQNMSNQSMLNLNSLPINPALVAAA----LNQWSLV 450
Fly 451 GNQLQNQNQD-QQGGNFLSWMAQNGGH---NNANNFGGRKGPNNPNNNPAANGIKTDNSEPQNGN 511
Fly 512 TGWSNQSSGSQNAAEKSNF 530 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
TBPH | NP_001163280.1 | RRM1_TDP43 | 108..184 | CDD:240767 | 50/75 (67%) |
RRM2_TDP43 | 192..261 | CDD:240768 | 51/69 (74%) | ||
tardbp | XP_012821726.1 | RRM | <87..232 | CDD:223796 | 84/146 (58%) |
RRM1_TDP43 | 115..191 | CDD:240767 | 50/75 (67%) | ||
RRM | <190..>299 | CDD:223796 | 65/141 (46%) | ||
RRM2_TDP43 | 200..270 | CDD:240768 | 51/69 (74%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 1 | 1.000 | 91 | 1.000 | Domainoid score | I7626 |
eggNOG | 0 | 0.000 | Not matched by this tool. | |||
Hieranoid | 1 | 1.000 | - | - | ||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 1 | 1.050 | 352 | 1.000 | Inparanoid score | I2215 |
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D1425837at2759 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0005498 | |
OrthoInspector | 1 | 1.000 | - | - | otm48016 | |
Panther | 1 | 1.100 | - | - | LDO | PTHR48033 |
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 1 | 1.030 | - | avgDist | Average_Evolutionary_Distance | R3811 |
SonicParanoid | 1 | 1.000 | - | - | X3916 | |
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
10 | 10.100 |