DRSC/TRiP Functional Genomics Resources

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Protein Alignment TBPH and tardbp

DIOPT Version :9

Sequence 1:NP_001163280.1 Gene:TBPH / 37781 FlyBaseID:FBgn0025790 Length:531 Species:Drosophila melanogaster
Sequence 2:XP_012821726.1 Gene:tardbp / 394651 XenbaseID:XB-GENE-974453 Length:418 Species:Xenopus tropicalis


Alignment Length:539 Identity:211/539 - (39%)
Similarity:279/539 - (51%) Gaps:158/539 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MDFVQVSEEEGDEPIELPAEEDGTLLLSTLQAQFPGSCGLKYRNLDTKAVRGVRSNEGRLFPPSV 65
            |::::|:|:|.:||:|:|:|:|||:||||:.|||||:|||:|||...:.:||||..||.|..|  
 Frog    12 MEYIRVAEDENEEPMEIPSEDDGTVLLSTVTAQFPGACGLRYRNPVNQCMRGVRLVEGILHAP-- 74

  Fly    66 ESGWGEYAYFCVFPKENKRKSDDNLENSTAKTKRIETRLRCTDLIVLGLPWKTTEESLREYFETY 130
            |:|||...|...:||:||||.|:...:|..|.||..|  :.:|||||||||||||:.|::||.|:
 Frog    75 ENGWGNLVYVVNYPKDNKRKMDETDASSAVKIKRAVT--KTSDLIVLGLPWKTTEQDLKDYFSTF 137

  Fly   131 GEVLMAQIKKDTKSGQSKGFGFVRFGSYDAQMRVLTNRHLIDGRWCEVKVPNSKGMGHQVPC-KV 194
            |||:|.|:|||.|:|.|||||||||..|:.|::|::.||:||||||:.|:||||.....:.. ||
 Frog   138 GEVIMVQVKKDAKTGHSKGFGFVRFADYETQVKVMSQRHMIDGRWCDCKLPNSKSPDEPMRSRKV 202

  Fly   195 FVGRCTEDINSDDLREYFSKFGEVTDVFIPRPFRAFSFVTFLDPDVAQSLCGEDHIIKGVSVHVS 259
            ||||||||:::::||::||::|||.|||||:|||||:||||.|..|||||||||.||||||||||
 Frog   203 FVGRCTEDMSAEELRQFFSQYGEVVDVFIPKPFRAFAFVTFADDQVAQSLCGEDLIIKGVSVHVS 267

  Fly   260 NAAPKAEQNRNQQVQSYNYNSANSFGMHSYHPQGNHMNPGRNGHHRGNNQHNAHGGENAIVPNNH 324
            .|.||  .|.|:|::........|||...|                               ||:.
 Frog   268 TAEPK--HNNNRQLERGGRFPGPSFGNQGY-------------------------------PNSR 299

  Fly   325 NIGTAGYGMGGNNYGGNSGGGYHNNGGNHSSGGNTNRQDGGSQYNSRQSNFHGMNQPHNGNVGGS 389
                ...|..|||.|||.|||                                         || 
 Frog   300 ----PSSGALGNNQGGNMGGG-----------------------------------------GG- 318

  Fly   390 NGWMNRGHLDMPNLQALGINSQGSSSSNQGQNMSNQSMLNLNSLPINPALVAAA----LNQWSLV 450
                                                  :|..:..||||::|||    .:.|.::
 Frog   319 --------------------------------------MNFGAFSINPAMMAAAQAALQSSWGMM 345

  Fly   451 GNQLQNQNQD-QQGGNFLSWMAQNGGH---NNANNFGGRKGPNNPNNNPAANGIKTDNSEPQNGN 511
            |.....|||. .||.|      |..|:   :...:||.       ||:..:|          :|.
 Frog   346 GMLASQQNQSGPQGSN------QGQGNQQRDQPQSFGS-------NNSYGSN----------SGA 387

  Fly   512 TGWSNQSSGSQNAAEKSNF 530
            .||     ||.||...|.|
 Frog   388 IGW-----GSPNAGSGSGF 401

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TBPHNP_001163280.1 RRM1_TDP43 108..184 CDD:240767 50/75 (67%)
RRM2_TDP43 192..261 CDD:240768 51/69 (74%)
tardbpXP_012821726.1 RRM <87..232 CDD:223796 84/146 (58%)
RRM1_TDP43 115..191 CDD:240767 50/75 (67%)
RRM <190..>299 CDD:223796 65/141 (46%)
RRM2_TDP43 200..270 CDD:240768 51/69 (74%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 91 1.000 Domainoid score I7626
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 352 1.000 Inparanoid score I2215
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1425837at2759
OrthoFinder 1 1.000 - - FOG0005498
OrthoInspector 1 1.000 - - otm48016
Panther 1 1.100 - - LDO PTHR48033
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3811
SonicParanoid 1 1.000 - - X3916
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1010.100

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