DRSC/TRiP Functional Genomics Resources

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Protein Alignment TBPH and CG4612

DIOPT Version :10

Sequence 1:NP_477400.1 Gene:TBPH / 37781 FlyBaseID:FBgn0025790 Length:531 Species:Drosophila melanogaster
Sequence 2:NP_611924.1 Gene:CG4612 / 37914 FlyBaseID:FBgn0035016 Length:307 Species:Drosophila melanogaster


Alignment Length:182 Identity:40/182 - (21%)
Similarity:75/182 - (41%) Gaps:48/182 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   121 ESLREYFETYGEVLMAQIKKDTKSGQSKGFGFVRFGSYDAQMRVLTNRHLIDGRWC--------- 176
            :::.:.|..:|.:|...:.|| :.|.|:|:|||.|.|.:|....:..   ::|..|         
  Fly   127 KAVYDTFSVFGNILNCNVAKD-EDGNSRGYGFVHFDSEEAARAAIEK---VNGMLCNNQKVHVVK 187

  Fly   177 --------EVKVPNSKGMGHQVPCKVFVGRCTEDINSDDLREYFSKFGEVTD--VFIPRPFRA-- 229
                    :.|..:.|.:        :|...:|:.....|||.|..:|.:|.  :.:....|:  
  Fly   188 FIPRRDREQEKATHFKNL--------YVKNLSEEFTEQHLREMFEPYGRITSHKLMLDEEGRSRR 244

  Fly   230 FSFVTFLDPDVAQSL--------CGEDHIIKGVSVHVSNAAPKAEQNRNQQV 273
            |.||.:.:|..|.:.        .|::..:     :|:.|..|||  |.|::
  Fly   245 FGFVAYENPQSALAAVIGLHGKQLGDNKFL-----YVARALSKAE--RQQEI 289

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TBPHNP_477400.1 TDP43_N 3..78 CDD:465833
RRM1_TDP43 108..181 CDD:409760 17/76 (22%)
RRM2_TDP43 192..261 CDD:409761 16/80 (20%)
CG4612NP_611924.1 PABP-1234 115..>303 CDD:130689 40/182 (22%)
Blue background indicates that the domain is not in the aligned region.

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