Protein Alignment TBPH and pAbp

DIOPT Version :9

• Sequence 1: NP_001163280.1
• Gene: TBPH / 37781
• FlyBaseID: FBgn0025790
• Length: 531
• Species: Drosophila melanogaster
• Sequence 2: NP_476667.1
• Gene: pAbp / 37070
• FlyBaseID: FBgn0265297
• Length: 634
• Species: Drosophila melanogaster
• Alignment Length: 581
• Identity: 113/581 - (19%)
• Similarity: 186/581 - (32%)
• Gaps: 205/581 - (35%)

  Fly    72 YAYFCVFPKENKRKSDDNLENSTAKTKRIETRLRCTDLIVLGLPWKTTEESLR------------ 124
            |||.......:..::.|.:.....:.|.|.            :.|...:.|||
  Fly    45 YAYVNFQQPADAERALDTMNFDLVRNKPIR------------IMWSQRDPSLRRSGVGNVFIKNL 97

  Fly   125 ----------EYFETYGEVLMAQIKKDTKSGQSKGFGFVRFGSYDAQMRVL--TNRHLIDGRWCE 177
                      :.|..:|.:|..::..|.| |.|||:|||.|.:.:|....:  .|..|::|:...
  Fly    98 DRAIDNKAIYDTFSAFGNILSCKVATDEK-GNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVY 161

  Fly   178 V-----KVPNSKGMGHQVP--CKVFVGRCTEDINSDDLREYFSKFGEVTDVFI----PRPFRAFS 231
            |     :....|.:|.:..  ..|:|...|||.:.:.|:|:|..:|::|...:    ....:.|.
  Fly   162 VGKFIPRKEREKELGEKAKLFTNVYVKNFTEDFDDEKLKEFFEPYGKITSYKVMSKEDGKSKGFG 226

  Fly   232 FVTFLDPDVA----QSLCGEDHIIKGVSVHVSNAAPKAEQNRN-----QQVQSYNYNSANSFGMH 287
            ||.|...:.|    |:|.|:| :.:|.|::|:.|..|||:.:.     ::::...:.|.  ||::
  Fly   227 FVAFETTEAAEAAVQALNGKD-MGEGKSLYVARAQKKAERQQELKRKFEELKQKRHESV--FGVN 288

  Fly   288 SY-----------------HPQGNHMN-------PGR----------------------NGHHRG 306
            .|                 .|.||..:       .||                      ||...|
  Fly   289 LYVKNLDDTIDDDRLRIAFSPYGNITSAKVMTDEEGRSKGFGFVCFNAASEATCAVTELNGRVVG 353

  Fly   307 NN-------------------------------------QHNAHGGENA-IVPNNHNIGTAGYG- 332
            :.                                     |.||..|... .:|:|...    :|
  Fly   354 SKPLYVALAQRKEERKAHLASQYMRHMTGMRMQQLGQIYQPNAASGFFVPTLPSNQRF----FGS 414

  Fly   333 ---------------------MGGNNYGGNSGGGYHNNGGNHSSGGNTNRQDGGSQYNSRQSNFH 376
                                 :.|...|..:.||:....|...           :|:.|..:...
  Fly   415 QVATQMRNTPRWVPQVRPPAAIQGVQAGAAAAGGFQGTAGAVP-----------TQFRSAAAGAR 468

  Fly   377 GMNQPHNGN---VGGSNGWMNRG------------HLDMPNLQALGINSQGSSSSNQGQNMSNQS 426
            |......|.   ...:|...|.|            ::.:|..|..|...|.:|:.....||.|..
  Fly   469 GAQPQVQGTHAAAAAANNMRNTGARAITGQQTAAPNMQIPGAQIAGGAQQRTSNYKYTSNMRNPP 533

  Fly   427 MLNLN-SLPINPALVAAALNQWSLVGNQLQN---QNQDQQGGNFLSWMAQNGGHNNANNFG 483
            :..|: :.||...|  ...|...|:.:.|.|   |.|.|..|..|..|.:   |.:||..|
  Fly   534 VPQLHQTQPIPQQL--QGKNSEKLIASLLANAKPQEQKQILGERLYPMIE---HMHANLAG 589

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
TBPH	NP_001163280.1	RRM1_TDP43	108..184	CDD:240767	22/104 (21%)
		RRM2_TDP43	192..261	CDD:240768	22/76 (29%)
pAbp	NP_476667.1	PABP-1234	2..625	CDD:130689	113/581 (19%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-		C45439605
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
	1	0.930