DRSC/TRiP Functional Genomics Resources

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Protein Alignment TBPH and Caper

DIOPT Version :10

Sequence 1:NP_477400.1 Gene:TBPH / 37781 FlyBaseID:FBgn0025790 Length:531 Species:Drosophila melanogaster
Sequence 2:NP_609095.1 Gene:Caper / 33989 FlyBaseID:FBgn0031883 Length:594 Species:Drosophila melanogaster


Alignment Length:193 Identity:44/193 - (22%)
Similarity:73/193 - (37%) Gaps:51/193 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   109 LIVLGLPWKTTEESLREYFETYGEVLMAQIKKDTKSGQSKGFGFVRFGSYDAQMRVL--TNRHLI 171
            |.|..|.:..||:.||..||.:|::...|:..||::|:|||:||:.:.:.|...:.|  .|...:
  Fly   337 LYVGSLHFNITEDMLRGIFEPFGKIDAIQLIMDTETGRSKGYGFITYHNADDAKKALEQLNGFEL 401

  Fly   172 DGRWCEVKVPNSKGMGHQVPCKVFVGRCTE--DINSDDL-----------------REYFSKFGE 217
            .||..:                  ||..||  |:|:..|                 .:...|..|
  Fly   402 AGRLMK------------------VGNVTERLDMNTTSLDTDEMDRTGIDLGATGRLQLMFKLAE 448

  Fly   218 VTDVFIPRPFRAFSFVTFLDP------DVAQSLCGEDHIIKGVSVHVSNAAPKAEQNRNQQVQ 274
            ...:.:|:........|...|      :||.|:..:..|:..:      ..|:.|.|....|:
  Fly   449 GAGLAVPQAAANALLATAPQPAPLQQQEVAPSIATQCFILSNM------FDPRTETNPTWDVE 505

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TBPHNP_477400.1 TDP43_N 3..78 CDD:465833
RRM1_TDP43 108..181 CDD:409760 24/73 (33%)
RRM2_TDP43 192..261 CDD:409761 16/93 (17%)
CaperNP_609095.1 SF-CC1 213..578 CDD:273721 44/193 (23%)
Blue background indicates that the domain is not in the aligned region.

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